Retinograd-AI:针对遗传性视网膜营养不良症的开源自动眼底自动荧光视网膜图像渐变性评估系统

Gunjan Naik, Saoud Al-Khuzaei, Ismail Moghul, Thales A. C. de Guimaraes, Sagnik Sen, Malena Daich Varela, Yichen Liu, Pallavi Bagga, Dun Jack Fu, Mariya Moosajee, Savita Madhusudhan, Andrew Webster, Samantha De Silva, Praveen J. Patel, Omar Mahroo, Susan M Downes, Michel Michaelides, Konstantinos Balaskas, Nikolas Pontikos, William Woof
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This dataset was used to train a Convolutional Neural Network (CNN) classification model to predict the gradability label of FAF images. Results:\nRetinograd-AI achieves a performance of 91% accuracy on our held-out dataset of 133 images with an Area Under the Receiver Operator Characteristic (AUROC) of 0.94, indicating high performance in distinguishing between gradable and ungradable images. Applying Retinograd-AI to our full internal dataset, the highest proportion of gradable images was found in the 30-50 years age group, where 84.3% of images were rated as gradable, while the lowest was in 0-15 year olds, where only 45.2% of images were rated as gradable. 83.4% of images from male patients were rated as gradable, and 90.6% of images from female patients. By genotype, from the 30 most common genetic diagnoses, the highest proportion of gradable images was in patients with disease causing variants in PRPH2 (93.9%), while the lowest was RDH12 (28.6%). Eye2Gene single-image gene classification top-5 accuracy on images rated by Retinograd-AI was 69.2%, while top-5 accuracy on images rated as ungradable was 39.0%. Conclusions:\nRetinograd-AI is the first open-source AI model for automated retinal image quality assessment of FAF images in IRDs. Automated gradability assessment through Retinograd AI enables large scale analysis of retinal images, which is an essential part of developing good analysis pipelines, and real-time quality assessment, which is essential for deployment of AI algorithms, such as Eye2Gene, into clinical settings. Due to the diverse nature of IRD pathologies, Retinograd-AI may also be applicable to FAF imaging for other conditions, either in its current form or through transfer learning and fine-tuning. 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引用次数: 0

摘要

目的:开发一套自动系统,用于评估遗传性视网膜疾病(IRD)患者眼底自动荧光(FAF)图像的质量。方法我们对遗传性视网膜营养不良症患者的 2445 张 FAF 图像数据集进行了标注,并由三位不同的专家分级员进行评估。分级者按照严格的分级协议将图像标记为可分级(质量可接受)或不可分级(质量差)。该数据集用于训练卷积神经网络(CNN)分类模型,以预测 FAF 图像的可分级标签。结果:Retinograd-AI 在我们保留的 133 幅图像数据集上达到了 91% 的准确率,接收器算子特征下面积(AUROC)为 0.94,这表明它在区分可分级和不可分级图像方面具有很高的性能。将 Retinograd-AI 应用于全部内部数据集后发现,30-50 岁年龄组中可分级图像的比例最高,84.3% 的图像被评为可分级,而 0-15 岁年龄组中可分级图像的比例最低,只有 45.2% 的图像被评为可分级。83.4% 的男性患者图像被评为可分级,90.6% 的女性患者图像被评为可分级。从基因型来看,在 30 种最常见的基因诊断中,PRPH2 致病变体患者的可分级图像比例最高(93.9%),最低的是 RDH12(28.6%)。Eye2Gene 单图像基因分类在 Retinograd-AI 评定的图像上的前 5 位准确率为 69.2%,而在评定为不可分级的图像上的前 5 位准确率为 39.0%。结论:Retinograd-AI 是首个开源的人工智能模型,用于对 IRD 中的 FAF 图像进行自动视网膜图像质量评估。通过 Retinograd AI 自动评估可对视网膜图像进行大规模分析(这是开发良好分析管道的重要部分)和实时质量评估(这对将 Eye2Gene 等人工智能算法应用于临床环境至关重要)。由于 IRD 病理的多样性,Retinograd-AI 也可适用于其他病症的 FAF 成像,无论是目前的形式还是通过迁移学习和微调。Retinograd-AI 是开源的,其源代码和网络权重可在 GitHub(https://github.com/eye2gene/retinograd-ai)上以 MIT 许可的方式获取。
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Retinograd-AI: An Open-source Automated Fundus Autofluorescence Retinal Image Gradability Assessment for Inherited Retinal Dystrophies
Purpose: To develop an automated system for assessing the quality of Fundus Autofluorescence (FAF) images in patients with inherited retinal diseases (IRD). Methods: We annotated a dataset of 2445 FAF images from patients with Inherited Retinal Dystrophies which were assessed by three different expert graders. Graders marked images as either gradable (acceptable quality) or ungradable (poor quality), following a strict grading protocol. This dataset was used to train a Convolutional Neural Network (CNN) classification model to predict the gradability label of FAF images. Results: Retinograd-AI achieves a performance of 91% accuracy on our held-out dataset of 133 images with an Area Under the Receiver Operator Characteristic (AUROC) of 0.94, indicating high performance in distinguishing between gradable and ungradable images. Applying Retinograd-AI to our full internal dataset, the highest proportion of gradable images was found in the 30-50 years age group, where 84.3% of images were rated as gradable, while the lowest was in 0-15 year olds, where only 45.2% of images were rated as gradable. 83.4% of images from male patients were rated as gradable, and 90.6% of images from female patients. By genotype, from the 30 most common genetic diagnoses, the highest proportion of gradable images was in patients with disease causing variants in PRPH2 (93.9%), while the lowest was RDH12 (28.6%). Eye2Gene single-image gene classification top-5 accuracy on images rated by Retinograd-AI was 69.2%, while top-5 accuracy on images rated as ungradable was 39.0%. Conclusions: Retinograd-AI is the first open-source AI model for automated retinal image quality assessment of FAF images in IRDs. Automated gradability assessment through Retinograd AI enables large scale analysis of retinal images, which is an essential part of developing good analysis pipelines, and real-time quality assessment, which is essential for deployment of AI algorithms, such as Eye2Gene, into clinical settings. Due to the diverse nature of IRD pathologies, Retinograd-AI may also be applicable to FAF imaging for other conditions, either in its current form or through transfer learning and fine-tuning. Retinograd-AI is open-sourced, and the source code and network weights are available under an MIT licence on GitHub at https://github.com/eye2gene/retinograd-ai.
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