Hülya Bayburt, Byeong Jun Choi, Jeong Min Kim, Ju Hye Baek, Che Ok Jeon
{"title":"和 Paraglaciecola algarum sp.nov.,并将 Pseudoalteromonas elyakovii、Pseudoalteromonas flavipulchra 和 Pseudoalteromonas profundi 重新分类为 P. distincta、P. maricaloris 和 P. gelatinilytica 的异型同义词。","authors":"Hülya Bayburt, Byeong Jun Choi, Jeong Min Kim, Ju Hye Baek, Che Ok Jeon","doi":"10.1099/ijsem.0.006491","DOIUrl":null,"url":null,"abstract":"<p><p>Two Gram-negative, obligately aerobic, rod-shaped bacteria, strains G1-22<sup>T</sup> and G1-23<sup>T</sup>, were isolated from the phycosphere of a marine brown alga. Both strains exhibited catalase- and oxidase-positive activities. Strain G1-22<sup>T</sup> displayed optimal growth at 25 °C, pH 8.0, and 2.0-3.0% (w/v) NaCl, while strain G1-23<sup>T</sup> exhibited optimal growth at 25 °C, pH 8.0, and 4.0% NaCl. Ubiquinone-8 was identified as the sole isoprenoid quinone in both strains. As major fatty acids (> 5%), strain G1-22<sup>T</sup> contained C<sub>16 : 0</sub>, summed feature 3 (C<sub>16 : 1</sub> <i>ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i>ω</i>6<i>c</i>), summed feature 8 (C<sub>18 : 1</sub> <i>ω</i>7<i>c</i> and/or C<sub>18 : 1</sub> <i>ω</i>6<i>c</i>), C<sub>12 : 1</sub> 3-OH, and C<sub>10 : 0</sub> 3-OH, while strain G1-23<sup>T</sup> contained C<sub>16 : 0</sub>, summed feature 3 (C<sub>16 : 1</sub> <i>ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i>ω</i>6<i>c</i>), and C<sub>14 : 0</sub>. Phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were major polar lipids in both strains. Strains G1-22<sup>T</sup> and G1-23<sup>T</sup> had DNA G+C contents of 40.2 and 38.9 mol%, respectively. Phylogenetic analyses based on 16S rRNA and genome sequences revealed that strains G1-22<sup>T</sup> and G1-23<sup>T</sup> formed distinct phylogenetic lineages within the genera <i>Psychrosphaera</i> and <i>Paraglaciecola</i>, respectively. Strain G1-22<sup>T</sup> showed closest relatedness to <i>Psychrosphaera ytuae</i> MTZ26<sup>T</sup> with 97.8% 16S rRNA gene sequence similarity, 70.2% average nucleotide identity (ANI), and a 21.5% digital DNA-DNA hybridization (dDDH) value, while strain G1-23<sup>T</sup> was most closely related to <i>Paraglaciecola aquimarina</i> KCTC 32108<sup>T</sup> with 95.6% 16S rRNA gene sequence similarity, 74.6% ANI, and a 20.1% dDDH value. Based on phenotypic and molecular characteristics, strains G1-22<sup>T</sup> and G1-23<sup>T</sup> are proposed to represent two novel species, namely <i>Psychrosphaera algicola</i> sp. nov. (type strain G1-22<sup>T</sup>=KACC 22486<sup>T</sup>=JCM 34971<sup>T</sup>) and <i>Paraglaciecola algarum</i> sp. nov. (type strain G1-23<sup>T</sup>=KACC 22490<sup>T</sup>=JCM 34972<sup>T</sup>), respectively. Additionally, based on the comparison of whole genome sequences, it is proposed that <i>Pseudoalteromonas elyakovii</i>, <i>Pseudoalteromonas flavipulchra</i>, and <i>Pseudoalteromonas profundi</i> are reclassified as later heterotypic synonyms of <i>Pseudoalteromonas distincta</i>, <i>Pseudoalteromonas maricaloris</i>, and <i>Pseudoalteromonas gelatinilytica</i>, respectively.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11324256/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Psychrosphaera algicola</i> sp. nov. and <i>Paraglaciecola algarum</i> sp. nov., and reclassification of <i>Pseudoalteromonas elyakovii</i>, <i>Pseudoalteromonas flavipulchra</i>, and <i>Pseudoalteromonas profundi</i> as later heterotypic synonyms of <i>P. distincta</i>, <i>P. maricaloris</i>, and <i>P. gelatinilytica</i>.\",\"authors\":\"Hülya Bayburt, Byeong Jun Choi, Jeong Min Kim, Ju Hye Baek, Che Ok Jeon\",\"doi\":\"10.1099/ijsem.0.006491\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two Gram-negative, obligately aerobic, rod-shaped bacteria, strains G1-22<sup>T</sup> and G1-23<sup>T</sup>, were isolated from the phycosphere of a marine brown alga. Both strains exhibited catalase- and oxidase-positive activities. Strain G1-22<sup>T</sup> displayed optimal growth at 25 °C, pH 8.0, and 2.0-3.0% (w/v) NaCl, while strain G1-23<sup>T</sup> exhibited optimal growth at 25 °C, pH 8.0, and 4.0% NaCl. Ubiquinone-8 was identified as the sole isoprenoid quinone in both strains. As major fatty acids (> 5%), strain G1-22<sup>T</sup> contained C<sub>16 : 0</sub>, summed feature 3 (C<sub>16 : 1</sub> <i>ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i>ω</i>6<i>c</i>), summed feature 8 (C<sub>18 : 1</sub> <i>ω</i>7<i>c</i> and/or C<sub>18 : 1</sub> <i>ω</i>6<i>c</i>), C<sub>12 : 1</sub> 3-OH, and C<sub>10 : 0</sub> 3-OH, while strain G1-23<sup>T</sup> contained C<sub>16 : 0</sub>, summed feature 3 (C<sub>16 : 1</sub> <i>ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i>ω</i>6<i>c</i>), and C<sub>14 : 0</sub>. Phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were major polar lipids in both strains. Strains G1-22<sup>T</sup> and G1-23<sup>T</sup> had DNA G+C contents of 40.2 and 38.9 mol%, respectively. Phylogenetic analyses based on 16S rRNA and genome sequences revealed that strains G1-22<sup>T</sup> and G1-23<sup>T</sup> formed distinct phylogenetic lineages within the genera <i>Psychrosphaera</i> and <i>Paraglaciecola</i>, respectively. Strain G1-22<sup>T</sup> showed closest relatedness to <i>Psychrosphaera ytuae</i> MTZ26<sup>T</sup> with 97.8% 16S rRNA gene sequence similarity, 70.2% average nucleotide identity (ANI), and a 21.5% digital DNA-DNA hybridization (dDDH) value, while strain G1-23<sup>T</sup> was most closely related to <i>Paraglaciecola aquimarina</i> KCTC 32108<sup>T</sup> with 95.6% 16S rRNA gene sequence similarity, 74.6% ANI, and a 20.1% dDDH value. Based on phenotypic and molecular characteristics, strains G1-22<sup>T</sup> and G1-23<sup>T</sup> are proposed to represent two novel species, namely <i>Psychrosphaera algicola</i> sp. nov. (type strain G1-22<sup>T</sup>=KACC 22486<sup>T</sup>=JCM 34971<sup>T</sup>) and <i>Paraglaciecola algarum</i> sp. nov. (type strain G1-23<sup>T</sup>=KACC 22490<sup>T</sup>=JCM 34972<sup>T</sup>), respectively. Additionally, based on the comparison of whole genome sequences, it is proposed that <i>Pseudoalteromonas elyakovii</i>, <i>Pseudoalteromonas flavipulchra</i>, and <i>Pseudoalteromonas profundi</i> are reclassified as later heterotypic synonyms of <i>Pseudoalteromonas distincta</i>, <i>Pseudoalteromonas maricaloris</i>, and <i>Pseudoalteromonas gelatinilytica</i>, respectively.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11324256/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006491\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006491","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Psychrosphaera algicola sp. nov. and Paraglaciecola algarum sp. nov., and reclassification of Pseudoalteromonas elyakovii, Pseudoalteromonas flavipulchra, and Pseudoalteromonas profundi as later heterotypic synonyms of P. distincta, P. maricaloris, and P. gelatinilytica.
Two Gram-negative, obligately aerobic, rod-shaped bacteria, strains G1-22T and G1-23T, were isolated from the phycosphere of a marine brown alga. Both strains exhibited catalase- and oxidase-positive activities. Strain G1-22T displayed optimal growth at 25 °C, pH 8.0, and 2.0-3.0% (w/v) NaCl, while strain G1-23T exhibited optimal growth at 25 °C, pH 8.0, and 4.0% NaCl. Ubiquinone-8 was identified as the sole isoprenoid quinone in both strains. As major fatty acids (> 5%), strain G1-22T contained C16 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c), C12 : 1 3-OH, and C10 : 0 3-OH, while strain G1-23T contained C16 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), and C14 : 0. Phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were major polar lipids in both strains. Strains G1-22T and G1-23T had DNA G+C contents of 40.2 and 38.9 mol%, respectively. Phylogenetic analyses based on 16S rRNA and genome sequences revealed that strains G1-22T and G1-23T formed distinct phylogenetic lineages within the genera Psychrosphaera and Paraglaciecola, respectively. Strain G1-22T showed closest relatedness to Psychrosphaera ytuae MTZ26T with 97.8% 16S rRNA gene sequence similarity, 70.2% average nucleotide identity (ANI), and a 21.5% digital DNA-DNA hybridization (dDDH) value, while strain G1-23T was most closely related to Paraglaciecola aquimarina KCTC 32108T with 95.6% 16S rRNA gene sequence similarity, 74.6% ANI, and a 20.1% dDDH value. Based on phenotypic and molecular characteristics, strains G1-22T and G1-23T are proposed to represent two novel species, namely Psychrosphaera algicola sp. nov. (type strain G1-22T=KACC 22486T=JCM 34971T) and Paraglaciecola algarum sp. nov. (type strain G1-23T=KACC 22490T=JCM 34972T), respectively. Additionally, based on the comparison of whole genome sequences, it is proposed that Pseudoalteromonas elyakovii, Pseudoalteromonas flavipulchra, and Pseudoalteromonas profundi are reclassified as later heterotypic synonyms of Pseudoalteromonas distincta, Pseudoalteromonas maricaloris, and Pseudoalteromonas gelatinilytica, respectively.