{"title":"具有局部不均匀性的动态晶格上的完全不对称简单排除过程","authors":"","doi":"10.1016/j.rinp.2024.107904","DOIUrl":null,"url":null,"abstract":"<div><p>In this manuscript, we introduce a totally asymmetric simple exclusion process on a dynamic lattice with inhomogeneity to model motor-based long-range transport along microtubules (MTs) which exhibit cycles of growth, shortening and regrowth at their growing tips. By mean-field approximation and numerical simulations, we explore phase diagrams for the particle density near the dynamic end of the lattice as well as over the entire lattice. In particular, we find seven different phases for the density over the entire lattice and explore the corresponding phase diagram by analytical analysis. Interestingly, we find that the density may have a linear profile in part of the lattice. When the lattice has a defect, we separate the lattice into two subsystems: a right subsystem with fixed length and a defect in the middle and a left subsystem with dynamic length. When the right subsystem is in maximum-current phase, we calculate an analytical approximation of the density away from the boundaries and the defect site and the density is in association with the reduced hopping rate at the defect site; the density at the left side of the defect site serves as the effective entry rate of the left subsystem. We find that with defects, the linear profiles no longer appear at the left end of the left subsystem and only five possible phases could occur. This is a step-forward to a more comprehensive mathematical description of intracellular long-range transport of organelles along MTs with instability.</p></div>","PeriodicalId":21042,"journal":{"name":"Results in Physics","volume":null,"pages":null},"PeriodicalIF":4.4000,"publicationDate":"2024-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211379724005898/pdfft?md5=1d501b878e22a3418693f3b8c0543156&pid=1-s2.0-S2211379724005898-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Totally asymmetric simple exclusion process on a dynamic lattice with local inhomogeneity\",\"authors\":\"\",\"doi\":\"10.1016/j.rinp.2024.107904\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>In this manuscript, we introduce a totally asymmetric simple exclusion process on a dynamic lattice with inhomogeneity to model motor-based long-range transport along microtubules (MTs) which exhibit cycles of growth, shortening and regrowth at their growing tips. By mean-field approximation and numerical simulations, we explore phase diagrams for the particle density near the dynamic end of the lattice as well as over the entire lattice. In particular, we find seven different phases for the density over the entire lattice and explore the corresponding phase diagram by analytical analysis. Interestingly, we find that the density may have a linear profile in part of the lattice. When the lattice has a defect, we separate the lattice into two subsystems: a right subsystem with fixed length and a defect in the middle and a left subsystem with dynamic length. When the right subsystem is in maximum-current phase, we calculate an analytical approximation of the density away from the boundaries and the defect site and the density is in association with the reduced hopping rate at the defect site; the density at the left side of the defect site serves as the effective entry rate of the left subsystem. We find that with defects, the linear profiles no longer appear at the left end of the left subsystem and only five possible phases could occur. This is a step-forward to a more comprehensive mathematical description of intracellular long-range transport of organelles along MTs with instability.</p></div>\",\"PeriodicalId\":21042,\"journal\":{\"name\":\"Results in Physics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.4000,\"publicationDate\":\"2024-08-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2211379724005898/pdfft?md5=1d501b878e22a3418693f3b8c0543156&pid=1-s2.0-S2211379724005898-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Results in Physics\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2211379724005898\",\"RegionNum\":2,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Results in Physics","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2211379724005898","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, MULTIDISCIPLINARY","Score":null,"Total":0}
Totally asymmetric simple exclusion process on a dynamic lattice with local inhomogeneity
In this manuscript, we introduce a totally asymmetric simple exclusion process on a dynamic lattice with inhomogeneity to model motor-based long-range transport along microtubules (MTs) which exhibit cycles of growth, shortening and regrowth at their growing tips. By mean-field approximation and numerical simulations, we explore phase diagrams for the particle density near the dynamic end of the lattice as well as over the entire lattice. In particular, we find seven different phases for the density over the entire lattice and explore the corresponding phase diagram by analytical analysis. Interestingly, we find that the density may have a linear profile in part of the lattice. When the lattice has a defect, we separate the lattice into two subsystems: a right subsystem with fixed length and a defect in the middle and a left subsystem with dynamic length. When the right subsystem is in maximum-current phase, we calculate an analytical approximation of the density away from the boundaries and the defect site and the density is in association with the reduced hopping rate at the defect site; the density at the left side of the defect site serves as the effective entry rate of the left subsystem. We find that with defects, the linear profiles no longer appear at the left end of the left subsystem and only five possible phases could occur. This is a step-forward to a more comprehensive mathematical description of intracellular long-range transport of organelles along MTs with instability.
Results in PhysicsMATERIALS SCIENCE, MULTIDISCIPLINARYPHYSIC-PHYSICS, MULTIDISCIPLINARY
CiteScore
8.70
自引率
9.40%
发文量
754
审稿时长
50 days
期刊介绍:
Results in Physics is an open access journal offering authors the opportunity to publish in all fundamental and interdisciplinary areas of physics, materials science, and applied physics. Papers of a theoretical, computational, and experimental nature are all welcome. Results in Physics accepts papers that are scientifically sound, technically correct and provide valuable new knowledge to the physics community. Topics such as three-dimensional flow and magnetohydrodynamics are not within the scope of Results in Physics.
Results in Physics welcomes three types of papers:
1. Full research papers
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- Data and/or a plot plus a description
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- Negative results
- Concept or design study
3. Letters to the Editor: Letters discussing a recent article published in Results in Physics are welcome. These are objective, constructive, or educational critiques of papers published in Results in Physics. Accepted letters will be sent to the author of the original paper for a response. Each letter and response is published together. Letters should be received within 8 weeks of the article''s publication. They should not exceed 750 words of text and 10 references.