油酸水解酶与磷脂膜双分子层结合的冷冻电子显微镜重建。

IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of structural biology Pub Date : 2024-08-14 DOI:10.1016/j.jsb.2024.108116
Michael L. Oldham , M. Zuhaib Qayyum , Ravi C. Kalathur , Charles O. Rock , Christopher D. Radka
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引用次数: 0

摘要

油酸氢化酶(OhyA)是一种细菌外周膜蛋白,可催化依赖于 FAD 的膜双分子层嵌入不饱和脂肪酸的水加成。机会性病原体金黄色葡萄球菌利用 OhyA 抵抗先天性免疫系统并支持定植。微生物组中的许多革兰氏阳性和革兰氏阴性细菌也编码 OhyA。OhyA 是一种二聚体黄酶,其羧基末端被确定为膜结合结构域;然而,只有阐明了膜结合结构,才能完全理解 OhyA 如何与细胞膜结合。现有的所有 OhyA 结构都描述了蛋白质在其功能环境之外的溶液状态。在这里,我们利用脂质体解决了功能单元的冷冻电镜结构:OhyA-膜复合体。该蛋白质在与膜结合后保持其结构,并略微改变脂质体表面的曲率。OhyA 优先与 20-30 nm 的脂质体结合,多份 OhyA 二聚体在脂质体表面组装,形成高阶寡聚体。二聚体的组装是合作性的,并沿着脂质体形成的脊延伸。我们还解决了一个 OhyA 二聚体的二聚体结构,它再现了稳定膜双分子层上二聚体组装的分子间相互作用,以及 OhyA 晶体结构晶格中的晶体接触。我们的工作使这种重要的界面酶的膜结合分子轨迹可视化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Cryo-EM reconstruction of oleate hydratase bound to a phospholipid membrane bilayer

Oleate hydratase (OhyA) is a bacterial peripheral membrane protein that catalyzes FAD-dependent water addition to membrane bilayer-embedded unsaturated fatty acids. The opportunistic pathogen Staphylococcus aureus uses OhyA to counteract the innate immune system and support colonization. Many Gram-positive and Gram-negative bacteria in the microbiome also encode OhyA. OhyA is a dimeric flavoenzyme whose carboxy terminus is identified as the membrane binding domain; however, understanding how OhyA binds to cellular membranes is not complete until the membrane-bound structure has been elucidated. All available OhyA structures depict the solution state of the protein outside its functional environment. Here, we employ liposomes to solve the cryo-electron microscopy structure of the functional unit: the OhyA•membrane complex. The protein maintains its structure upon membrane binding and slightly alters the curvature of the liposome surface. OhyA preferentially associates with 20–30 nm liposomes with multiple copies of OhyA dimers assembling on the liposome surface resulting in the formation of higher-order oligomers. Dimer assembly is cooperative and extends along a formed ridge of the liposome. We also solved an OhyA dimer of dimers structure that recapitulates the intermolecular interactions that stabilize the dimer assembly on the membrane bilayer as well as the crystal contacts in the lattice of the OhyA crystal structure. Our work enables visualization of the molecular trajectory of membrane binding for this important interfacial enzyme.

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来源期刊
Journal of structural biology
Journal of structural biology 生物-生化与分子生物学
CiteScore
6.30
自引率
3.30%
发文量
88
审稿时长
65 days
期刊介绍: Journal of Structural Biology (JSB) has an open access mirror journal, the Journal of Structural Biology: X (JSBX), sharing the same aims and scope, editorial team, submission system and rigorous peer review. Since both journals share the same editorial system, you may submit your manuscript via either journal homepage. You will be prompted during submission (and revision) to choose in which to publish your article. The editors and reviewers are not aware of the choice you made until the article has been published online. JSB and JSBX publish papers dealing with the structural analysis of living material at every level of organization by all methods that lead to an understanding of biological function in terms of molecular and supermolecular structure. Techniques covered include: • Light microscopy including confocal microscopy • All types of electron microscopy • X-ray diffraction • Nuclear magnetic resonance • Scanning force microscopy, scanning probe microscopy, and tunneling microscopy • Digital image processing • Computational insights into structure
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