凝结界面力重新定位 DNA 位点并探测染色质的粘弹性。

IF 45.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Cell Pub Date : 2024-09-19 Epub Date: 2024-08-20 DOI:10.1016/j.cell.2024.07.034
Amy R Strom, Yoonji Kim, Hongbo Zhao, Yi-Che Chang, Natalia D Orlovsky, Andrej Košmrlj, Cornelis Storm, Clifford P Brangwynne
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引用次数: 0

摘要

生物分子凝聚体在活细胞中通过相分离和相关相转变进行组装。这些动态分子集合体的一个未得到充分重视的特点是,它们与其他细胞结构(包括膜、细胞骨架、DNA 和 RNA 以及其他无膜区)形成界面。这些界面预计会产生毛细管力,但在活细胞中很少有量化和利用这些力的方法。在这里,我们介绍粘弹性染色质拴系和组织(VECTOR),它利用光诱导生物分子凝聚物在目标DNA位点产生毛细力。VECTOR 可用于在几秒到几分钟的时间尺度内对基因组位点进行可编程的重新定位,定量揭示染色质粘弹性材料特性的局部异质性。这些合成凝集物由在活细胞中自然形成液态结构的成分构建而成,凸显了原生凝集物在产生力和做功以重组基因组并影响染色质结构方面的潜在作用。
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Condensate interfacial forces reposition DNA loci and probe chromatin viscoelasticity.

Biomolecular condensates assemble in living cells through phase separation and related phase transitions. An underappreciated feature of these dynamic molecular assemblies is that they form interfaces with other cellular structures, including membranes, cytoskeleton, DNA and RNA, and other membraneless compartments. These interfaces are expected to give rise to capillary forces, but there are few ways of quantifying and harnessing these forces in living cells. Here, we introduce viscoelastic chromatin tethering and organization (VECTOR), which uses light-inducible biomolecular condensates to generate capillary forces at targeted DNA loci. VECTOR can be utilized to programmably reposition genomic loci on a timescale of seconds to minutes, quantitatively revealing local heterogeneity in the viscoelastic material properties of chromatin. These synthetic condensates are built from components that naturally form liquid-like structures in living cells, highlighting the potential role for native condensates to generate forces and do work to reorganize the genome and impact chromatin architecture.

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来源期刊
Cell
Cell 生物-生化与分子生物学
CiteScore
110.00
自引率
0.80%
发文量
396
审稿时长
2 months
期刊介绍: Cells is an international, peer-reviewed, open access journal that focuses on cell biology, molecular biology, and biophysics. It is affiliated with several societies, including the Spanish Society for Biochemistry and Molecular Biology (SEBBM), Nordic Autophagy Society (NAS), Spanish Society of Hematology and Hemotherapy (SEHH), and Society for Regenerative Medicine (Russian Federation) (RPO). The journal publishes research findings of significant importance in various areas of experimental biology, such as cell biology, molecular biology, neuroscience, immunology, virology, microbiology, cancer, human genetics, systems biology, signaling, and disease mechanisms and therapeutics. The primary criterion for considering papers is whether the results contribute to significant conceptual advances or raise thought-provoking questions and hypotheses related to interesting and important biological inquiries. In addition to primary research articles presented in four formats, Cells also features review and opinion articles in its "leading edge" section, discussing recent research advancements and topics of interest to its wide readership.
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