在深度学习应用中使用 Swin UNETR 架构对脑部磁共振成像扫描进行广泛的多标签梗塞分类

IF 2.1 Q1 REHABILITATION Annals of Rehabilitation Medicine-ARM Pub Date : 2024-08-01 Epub Date: 2024-08-22 DOI:10.5535/arm.230029
Jaeho Oh, Hyunchul An
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引用次数: 0

摘要

目的:利用 Swin UNEt TRansformers(Swin UNETR)架构的优势,最精确地分辨梗塞位置和类型:利用 Swin UNEt TRansformers(Swin UNETR)架构的优势,最精确地区分梗死位置和类型:研究采用了两阶段训练方法。在第一阶段,使用缺血性脑卒中病变分割挑战赛(ISLES)2022 数据集训练 Swin UNETR 模型,其中包括急性和亚急性脑梗塞病例。第二阶段使用 309 名患者的数据进行训练。110 个类别是根据 22 个特定脑区对脑梗塞进行分类的结果。每个区域分为左右两侧,每侧包括四种梗塞类型(急性、急性腔隙性、亚急性、亚急性腔隙性)。Swin UNETR 的独特架构融合了变压器和 U 网设计的元素,采用分层变压器计算,并带有移位窗口,在研究中发挥了至关重要的作用:在使用 ISLES 2022 数据集进行 Swin UNETR 训练期间,批量损失降至 0.8885±0.1897,训练和验证骰子分数分别达到 0.4224±0.0710 和 0.4827±0.0607。最佳模型权重的验证骰分为 0.5747。在患者数据模型中,批次损失降至 0.0565±0.0427,最终训练和验证准确度分别为 0.9842±0.0005 和 0.9837±0.0010:本研究的结果超过了同类研究的准确性,但也存在过度拟合的问题,因此今后需要努力提高可推广性。这种详细的分类可大大帮助医生在临床环境中诊断梗塞。
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Extensive Multilabel Classification of Brain MRI Scans for Infarcts Using the Swin UNETR Architecture in Deep Learning Applications.

Objective: To distinguish infarct location and type with the utmost precision using the advantages of the Swin UNEt TRansformers (Swin UNETR) architecture.

Methods: The research employed a two-phase training approach. In the first phase, the Swin UNETR model was trained using the Ischemic Stroke Lesion Segmentation Challenge (ISLES) 2022 dataset, which included cases of acute and subacute infarcts. The second phase involved training with data from 309 patients. The 110 categories result from classifying infarcts based on 22 specific brain regions. Each region is divided into right and left sides, and each side includes four types of infarcts (acute, acute lacunar, subacute, subacute lacunar). The unique architecture of Swin UNETR, integrating elements of both the transformer and u-net designs with a hierarchical transformer computed with shifted windows, played a crucial role in the study.

Results: During Swin UNETR training with the ISLES 2022 dataset, batch loss decreased to 0.8885±0.1897, with training and validation dice scores reaching 0.4224±0.0710 and 0.4827±0.0607, respectively. The optimal model weight had a validation dice score of 0.5747. In the patient data model, batch loss decreased to 0.0565±0.0427, with final training and validation accuracies of 0.9842±0.0005 and 0.9837±0.0010.

Conclusion: The results of this study surpass the accuracy of similar studies, but they involve the issue of overfitting, highlighting the need for future efforts to improve generalizability. Such detailed classifications could significantly aid physicians in diagnosing infarcts in clinical settings.

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来源期刊
CiteScore
2.50
自引率
7.70%
发文量
32
审稿时长
30 weeks
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