以密度泛函理论为指导,高效识别对铟和锗具有更高选择性的苷元。

Journal of hazardous materials Pub Date : 2024-10-05 Epub Date: 2024-08-19 DOI:10.1016/j.jhazmat.2024.135523
Christian Hintersatz, Satoru Tsushima, Tobias Kaufer, Jerome Kretzschmar, Angela Thewes, Katrin Pollmann, Rohan Jain
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引用次数: 0

摘要

嗜苷酸盐是很有希望应用于新型回收和生物修复技术的配体,因为它们可以选择性地络合各种金属。然而,目前已知的嗜苷酸盐有 250 多种,在湿实验室中选择合适的络合剂是不切实际的。因此,本研究以锗和铟为例,建立了一种基于密度泛函理论(DFT)的方法,以有效识别对目标金属具有更高选择性的络合剂。考虑到 239 种结构,对化学性质相似的嗜硒团进行了聚类,并利用 DFT 建立了它们的络合反应模型。计算结果表明,与参考苷元去铁胺 B(DFOB)相比,苷元对铟或锗的选择性分别高出 128% 或 48%。该方法通过菲姆巴坦 A 和农杆菌素进行了实验验证,结果表明与 DFOB 相比,铟的选择性结合率高达 40%,锗的结合率至少高出 7 倍。这项研究的结果为在生态友好型技术中利用嗜硒酸盐从各种工业用水和浸出液中回收多种不同的关键金属或采用生物修复方法打开了大门。由于可以省略对分子的重新建模,因此应用本研究创建的苷元结构几何优化数据库可以极大地促进这项工作。
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Efficient density functional theory directed identification of siderophores with increased selectivity towards indium and germanium.

Siderophores are promising ligands for application in novel recycling and bioremediation technologies, as they can selectively complex a variety of metals. However, with over 250 known siderophores, the selection of suiting complexants in the wet lab is impractical. Thus, this study established a density functional theory (DFT) based approach to efficiently identify siderophores with increased selectivity towards target metals on the example of germanium and indium. Considering 239 structures, chemically similar siderophores were clustered, and their complexation reactions modeled utilizing DFT. The calculations revealed siderophores with, compared to the reference siderophore desferrioxamine B (DFOB), up to 128 % or 48 % higher selectivity for indium or germanium, respectively. Experimental validation of the method was conducted with fimsbactin A and agrobactin, demonstrating up to 40 % more selective indium binding and at least sevenfold better germanium binding than DFOB, respectively. The results generated in this study open the door for the utilization of siderophores in eco-friendly technologies for the recovery of many different critical metals from various industry waters and leachates or bioremediation approaches. This endeavor is greatly facilitated by applying the herein-created database of geometry-optimized siderophore structures as de novo modeling of the molecules can be omitted.

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