{"title":"用于动态 PET 成像中代谢物校正血浆输入函数估计的物理信息深度神经网络","authors":"","doi":"10.1016/j.cmpb.2024.108375","DOIUrl":null,"url":null,"abstract":"<div><h3>Introduction:</h3><p>We propose a novel approach for the non-invasive quantification of dynamic PET imaging data, focusing on the arterial input function (AIF) without the need for invasive arterial cannulation.</p></div><div><h3>Methods:</h3><p>Our method utilizes a combination of three-dimensional depth-wise separable convolutional layers and a physically informed deep neural network to incorporate<em>a priori</em> knowledge about the AIF’s functional form and shape, enabling precise predictions of the concentrations of [<span><math><mrow><msup><mrow></mrow><mrow><mn>11</mn></mrow></msup><mi>C</mi></mrow></math></span>]PBR28 in whole blood and the free tracer in metabolite-corrected plasma.</p></div><div><h3>Results:</h3><p>We found a robust linear correlation between our model’s predicted AIF curves and those obtained through traditional, invasive measurements. We achieved an average cross-validated Pearson correlation of 0.86 for whole blood and 0.89 for parent plasma curves. Moreover, our method’s ability to estimate the volumes of distribution across several key brain regions – without significant differences between the use of predicted versus actual AIFs in a two-tissue compartmental model – successfully captures the intrinsic variability related to sex, the binding affinity of the translocator protein (18 kDa), and age.</p></div><div><h3>Conclusions:</h3><p>These results not only validate our method’s accuracy and reliability but also establish a foundation for a streamlined, non-invasive approach to dynamic PET data quantification. By offering a precise and less invasive alternative to traditional quantification methods, our technique holds significant promise for expanding the applicability of PET imaging across a wider range of tracers, thereby enhancing its utility in both clinical research and diagnostic settings.</p></div>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":null,"pages":null},"PeriodicalIF":4.9000,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0169260724003687/pdfft?md5=259ff7c1b33c404b9993266e1dee4964&pid=1-s2.0-S0169260724003687-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging\",\"authors\":\"\",\"doi\":\"10.1016/j.cmpb.2024.108375\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Introduction:</h3><p>We propose a novel approach for the non-invasive quantification of dynamic PET imaging data, focusing on the arterial input function (AIF) without the need for invasive arterial cannulation.</p></div><div><h3>Methods:</h3><p>Our method utilizes a combination of three-dimensional depth-wise separable convolutional layers and a physically informed deep neural network to incorporate<em>a priori</em> knowledge about the AIF’s functional form and shape, enabling precise predictions of the concentrations of [<span><math><mrow><msup><mrow></mrow><mrow><mn>11</mn></mrow></msup><mi>C</mi></mrow></math></span>]PBR28 in whole blood and the free tracer in metabolite-corrected plasma.</p></div><div><h3>Results:</h3><p>We found a robust linear correlation between our model’s predicted AIF curves and those obtained through traditional, invasive measurements. We achieved an average cross-validated Pearson correlation of 0.86 for whole blood and 0.89 for parent plasma curves. Moreover, our method’s ability to estimate the volumes of distribution across several key brain regions – without significant differences between the use of predicted versus actual AIFs in a two-tissue compartmental model – successfully captures the intrinsic variability related to sex, the binding affinity of the translocator protein (18 kDa), and age.</p></div><div><h3>Conclusions:</h3><p>These results not only validate our method’s accuracy and reliability but also establish a foundation for a streamlined, non-invasive approach to dynamic PET data quantification. 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引用次数: 0
摘要
导读:我们提出了一种无创量化动态 PET 成像数据的新方法,重点是动脉输入功能(AIF),无需进行有创动脉插管。方法:我们的方法结合使用了三维深度可分离卷积层和物理信息深度神经网络,纳入了有关 AIF 功能形式和形状的先验知识,从而能够精确预测全血中 [11C]PBR28 的浓度和代谢物校正血浆中游离示踪剂的浓度。经交叉验证,全血和母血浆曲线的平均皮尔逊相关性分别为 0.86 和 0.89。结论:这些结果不仅验证了我们方法的准确性和可靠性,还为动态 PET 数据量化的简化、非侵入性方法奠定了基础。我们的技术为传统的量化方法提供了一种精确且创伤较小的替代方法,有望扩大 PET 成像在更多示踪剂中的应用范围,从而提高其在临床研究和诊断中的实用性。
Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging
Introduction:
We propose a novel approach for the non-invasive quantification of dynamic PET imaging data, focusing on the arterial input function (AIF) without the need for invasive arterial cannulation.
Methods:
Our method utilizes a combination of three-dimensional depth-wise separable convolutional layers and a physically informed deep neural network to incorporatea priori knowledge about the AIF’s functional form and shape, enabling precise predictions of the concentrations of []PBR28 in whole blood and the free tracer in metabolite-corrected plasma.
Results:
We found a robust linear correlation between our model’s predicted AIF curves and those obtained through traditional, invasive measurements. We achieved an average cross-validated Pearson correlation of 0.86 for whole blood and 0.89 for parent plasma curves. Moreover, our method’s ability to estimate the volumes of distribution across several key brain regions – without significant differences between the use of predicted versus actual AIFs in a two-tissue compartmental model – successfully captures the intrinsic variability related to sex, the binding affinity of the translocator protein (18 kDa), and age.
Conclusions:
These results not only validate our method’s accuracy and reliability but also establish a foundation for a streamlined, non-invasive approach to dynamic PET data quantification. By offering a precise and less invasive alternative to traditional quantification methods, our technique holds significant promise for expanding the applicability of PET imaging across a wider range of tracers, thereby enhancing its utility in both clinical research and diagnostic settings.
期刊介绍:
To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine.
Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.