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引用次数: 0
摘要
许多疱疹病毒相关疾病的预防和治疗都是以抗病毒疗法为基础的,然而治疗的成功却受到耐药性发展的限制。目前还没有一个单一的数据库对耐药性突变进行编目,这妨碍了利用序列数据对患者进行管理。因此,我们开发了 HerpesDRG,这是一个包含所有已知耐药基因和当前治疗方案的耐药突变数据库,它是通过对现有基因型到表型文献的系统性审查而建立的。该数据库与一个 R 软件包一起发布,该软件包提供了一种简单的方法,可从普通的 sanger 和新一代测序数据中进行耐药性变异注释和临床影响分析。该数据库是首个公开可用、可由社区维护的人类疱疹病毒(HHV)耐药性变异数据库,是为解决 HHV 耐药性问题的研究人员和临床医生开发的。
HerpesDRG: a comprehensive resource for human herpesvirus antiviral drug resistance genotyping.
The prevention and treatment of many herpesvirus associated diseases is based on the utilization of antiviral therapies, however therapeutic success is limited by the development of drug resistance. Currently no single database cataloguing resistance mutations exists, which hampers the use of sequence data for patient management. We therefore developed HerpesDRG, a drug resistance mutation database that incorporates all the known resistance genes and current treatment options, built from a systematic review of available genotype to phenotype literature. The database is released along with an R package that provides a simple approach to resistance variant annotation and clinical implication analysis from common sanger and next generation sequencing data. This represents the first openly available and community maintainable database of drug resistance mutations for the human herpesviruses (HHV), developed for the community of researchers and clinicians tackling HHV drug resistance.
期刊介绍:
BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.
BMC Bioinformatics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all areas of biology and medicine. We offer an efficient, fair and friendly peer review service, and are committed to publishing all sound science, provided that there is some advance in knowledge presented by the work.