水族海绵 Tethya wilhelma 和 Tethya minuta(多孔动物:Demospongiae)的基因组。

Q2 Pharmacology, Toxicology and Pharmaceutics F1000Research Pub Date : 2024-08-01 eCollection Date: 2024-01-01 DOI:10.12688/f1000research.150836.2
Gert Wörheide, Warren R Francis, Fabian Deister, Stefan Krebs, Dirk Erpenbeck, Sergio Vargas
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引用次数: 0

摘要

海绵(多孔动物门)是一种水生无柄类元动物,分布于世界各地的海洋和淡水环境中。它们在动物生命树中具有重要地位,是最早分支的元动物之一,作为滤食性动物,它们在生态学上发挥着至关重要的作用,尤其是在珊瑚礁中,但很容易受到气候变化的影响。面对当前的生物多样性危机,基因组数据对于物种保护工作和预测其应对环境变化的进化潜力至关重要。然而,可培养的海绵物种中附有高质量基因组注释的数量有限,无法进一步全面了解动物的进化、功能及其对正在发生的全球变化的反应。尽管发表了一些高质量的注释海绵基因组,但可培养海绵物种的资源仍然是一个空白。为了填补这一空白,我们提供了两个同源水族物种 Tethya wilhelma 和 Tethya minuta 的高质量基因组草案。因此,这两个物种有望成为实验室模型,促进我们对海绵生物学的了解,并为研究动物进化、功能和对环境挑战的反应提供宝贵的资源。
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The genomes of the aquarium sponges Tethya wilhelma and Tethya minuta (Porifera: Demospongiae).

Sponges (Phylum Porifera) are aquatic sessile metazoans found worldwide in marine and freshwater environments. They are significant in the animal tree of life as one of the earliest-branching metazoan lineages and as filter feeders play crucial ecological roles, particularly in coral reefs, but are susceptible to the effects of climate change. In the face of the current biodiversity crisis, genomic data is crucial for species conservation efforts and predicting their evolutionary potential in response to environmental changes. However, there is a limited availability of culturable sponge species with annotated high-quality genomes to further comprehensive insights into animal evolution, function, and their response to the ongoing global change. Despite the publication of a few high-quality annotated sponge genomes, there remains a gap in resources for culturable sponge species. To address this gap, we provide high quality draft genomes of the two congeneric aquarium species Tethya wilhelma and Tethya minuta, small ball-shaped demosponges that are easily maintained long-term in ex situ culture. As such, they offer promising opportunities as laboratory models to contribute to advancing our understanding of sponge biology and provide valuable resources for studying animal evolution, function, and responses to environmental challenges.

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来源期刊
F1000Research
F1000Research Pharmacology, Toxicology and Pharmaceutics-Pharmacology, Toxicology and Pharmaceutics (all)
CiteScore
5.00
自引率
0.00%
发文量
1646
审稿时长
1 weeks
期刊介绍: F1000Research publishes articles and other research outputs reporting basic scientific, scholarly, translational and clinical research across the physical and life sciences, engineering, medicine, social sciences and humanities. F1000Research is a scholarly publication platform set up for the scientific, scholarly and medical research community; each article has at least one author who is a qualified researcher, scholar or clinician actively working in their speciality and who has made a key contribution to the article. Articles must be original (not duplications). All research is suitable irrespective of the perceived level of interest or novelty; we welcome confirmatory and negative results, as well as null studies. F1000Research publishes different type of research, including clinical trials, systematic reviews, software tools, method articles, and many others. Reviews and Opinion articles providing a balanced and comprehensive overview of the latest discoveries in a particular field, or presenting a personal perspective on recent developments, are also welcome. See the full list of article types we accept for more information.
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