不对称突变和重组情况下的 Crow-Kimura 进化模型

IF 4.6 2区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Chinese Journal of Physics Pub Date : 2024-08-13 DOI:10.1016/j.cjph.2024.08.015
Vladimir Suvorov , Hirobumi Mineo , David B. Saakian
{"title":"不对称突变和重组情况下的 Crow-Kimura 进化模型","authors":"Vladimir Suvorov ,&nbsp;Hirobumi Mineo ,&nbsp;David B. Saakian","doi":"10.1016/j.cjph.2024.08.015","DOIUrl":null,"url":null,"abstract":"<div><p>The mutation and recombination often have different rates for forward and backward processes and this study explores the less common case of asymmetric mutation and recombination rates. The primary focus is on analyzing the error threshold transition in the context of asymmetric mutations. We investigate how the error threshold changes in the case of a single peak fitness landscape. We analyze how surplus (the availability of beneficial mutations) changes with the degree of asymmetry in mutation and recombination rates. The model is extended to include asymmetric recombination (horizontal gene transfer). We focus on the complex interplay between mutation and recombination rates in asymmetric scenarios and their effects on error thresholds, surplus, mean fitness, and other key aspects of evolutionary dynamics. The findings contribute to a more nuanced understanding of evolution in situations where biological processes do not follow the simplifying assumption of symmetric rates.</p></div>","PeriodicalId":10340,"journal":{"name":"Chinese Journal of Physics","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Crow-Kimura evolution model in case of asymmetric mutation and recombination\",\"authors\":\"Vladimir Suvorov ,&nbsp;Hirobumi Mineo ,&nbsp;David B. Saakian\",\"doi\":\"10.1016/j.cjph.2024.08.015\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The mutation and recombination often have different rates for forward and backward processes and this study explores the less common case of asymmetric mutation and recombination rates. The primary focus is on analyzing the error threshold transition in the context of asymmetric mutations. We investigate how the error threshold changes in the case of a single peak fitness landscape. We analyze how surplus (the availability of beneficial mutations) changes with the degree of asymmetry in mutation and recombination rates. The model is extended to include asymmetric recombination (horizontal gene transfer). We focus on the complex interplay between mutation and recombination rates in asymmetric scenarios and their effects on error thresholds, surplus, mean fitness, and other key aspects of evolutionary dynamics. The findings contribute to a more nuanced understanding of evolution in situations where biological processes do not follow the simplifying assumption of symmetric rates.</p></div>\",\"PeriodicalId\":10340,\"journal\":{\"name\":\"Chinese Journal of Physics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-08-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chinese Journal of Physics\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0577907324003174\",\"RegionNum\":2,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PHYSICS, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chinese Journal of Physics","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0577907324003174","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PHYSICS, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

突变和重组在前向和后向过程中通常具有不同的速率,本研究探讨了不对称突变和重组速率这种不太常见的情况。主要重点是分析非对称突变背景下的误差阈值转换。我们研究了错误阈值在单峰适应度景观情况下的变化。我们分析了剩余(有益突变的可用性)如何随着突变率和重组率的不对称程度而变化。该模型被扩展到包括非对称重组(水平基因转移)。我们重点研究了非对称情景下突变率和重组率之间复杂的相互作用,以及它们对误差阈值、剩余、平均适合度和进化动态的其他关键方面的影响。这些发现有助于人们更细致地理解生物进化过程不遵循对称率这一简化假设的情况。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
The Crow-Kimura evolution model in case of asymmetric mutation and recombination

The mutation and recombination often have different rates for forward and backward processes and this study explores the less common case of asymmetric mutation and recombination rates. The primary focus is on analyzing the error threshold transition in the context of asymmetric mutations. We investigate how the error threshold changes in the case of a single peak fitness landscape. We analyze how surplus (the availability of beneficial mutations) changes with the degree of asymmetry in mutation and recombination rates. The model is extended to include asymmetric recombination (horizontal gene transfer). We focus on the complex interplay between mutation and recombination rates in asymmetric scenarios and their effects on error thresholds, surplus, mean fitness, and other key aspects of evolutionary dynamics. The findings contribute to a more nuanced understanding of evolution in situations where biological processes do not follow the simplifying assumption of symmetric rates.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Chinese Journal of Physics
Chinese Journal of Physics 物理-物理:综合
CiteScore
8.50
自引率
10.00%
发文量
361
审稿时长
44 days
期刊介绍: The Chinese Journal of Physics publishes important advances in various branches in physics, including statistical and biophysical physics, condensed matter physics, atomic/molecular physics, optics, particle physics and nuclear physics. The editors welcome manuscripts on: -General Physics: Statistical and Quantum Mechanics, etc.- Gravitation and Astrophysics- Elementary Particles and Fields- Nuclear Physics- Atomic, Molecular, and Optical Physics- Quantum Information and Quantum Computation- Fluid Dynamics, Nonlinear Dynamics, Chaos, and Complex Networks- Plasma and Beam Physics- Condensed Matter: Structure, etc.- Condensed Matter: Electronic Properties, etc.- Polymer, Soft Matter, Biological, and Interdisciplinary Physics. CJP publishes regular research papers, feature articles and review papers.
期刊最新文献
Synchronization in multiplex neural networks with homeostatic structural plasticity Resolving FLRW cosmology through effective equation of state in f(T) gravity Impact of temperature-dependent viscosity on linear and weakly nonlinear stability of double-diffusive convection in viscoelastic fluid Accurate measurement of wavelength-Dependent beam parameters of a supercontinuum light source focused by a lensed fiber probe Exploring Tsallis thermodynamics for boundary conformal field theories in gauge/gravity duality
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1