网状变异自动编码器中的潜伏纠缠改善了颅面综合征的诊断并有助于手术规划

IF 4.9 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2024-08-26 DOI:10.1016/j.cmpb.2024.108395
Simone Foti , Alexander J. Rickart , Bongjin Koo , Eimear O’ Sullivan , Lara S. van de Lande , Athanasios Papaioannou , Roman Khonsari , Danail Stoyanov , N.u. Owase Jeelani , Silvia Schievano , David J. Dunaway , Matthew J. Clarkson
{"title":"网状变异自动编码器中的潜伏纠缠改善了颅面综合征的诊断并有助于手术规划","authors":"Simone Foti ,&nbsp;Alexander J. Rickart ,&nbsp;Bongjin Koo ,&nbsp;Eimear O’ Sullivan ,&nbsp;Lara S. van de Lande ,&nbsp;Athanasios Papaioannou ,&nbsp;Roman Khonsari ,&nbsp;Danail Stoyanov ,&nbsp;N.u. Owase Jeelani ,&nbsp;Silvia Schievano ,&nbsp;David J. Dunaway ,&nbsp;Matthew J. Clarkson","doi":"10.1016/j.cmpb.2024.108395","DOIUrl":null,"url":null,"abstract":"<div><h3>Background and objective:</h3><p>The use of deep learning to undertake shape analysis of the complexities of the human head holds great promise. However, there have traditionally been a number of barriers to accurate modelling, especially when operating on both a global and local level.</p></div><div><h3>Methods:</h3><p>In this work, we will discuss the application of the Swap Disentangled Variational Autoencoder (SD-VAE) with relevance to Crouzon, Apert and Muenke syndromes. The model is trained on a dataset of 3D meshes of healthy and syndromic patients which was increased in size with a novel data augmentation technique based on spectral interpolation. Thanks to its semantically meaningful and disentangled latent representation, SD-VAE is used to analyse and generate head shapes while considering the influence of different anatomical sub-units.</p></div><div><h3>Results:</h3><p>Although syndrome classification is performed on the entire mesh, it is also possible, for the first time, to analyse the influence of each region of the head on the syndromic phenotype. By manipulating specific parameters of the generative model, and producing procedure-specific new shapes, it is also possible to approximate the outcome of a range of craniofacial surgical procedures.</p></div><div><h3>Conclusion:</h3><p>This work opens new avenues to advance diagnosis, aids surgical planning and allows for the objective evaluation of surgical outcomes. Our code is available at <span><span>github.com/simofoti/CraniofacialSD-VAE</span><svg><path></path></svg></span>.</p></div>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":"256 ","pages":"Article 108395"},"PeriodicalIF":4.9000,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0169260724003882/pdfft?md5=7bb50e4fab3ca51c5867372f1437b450&pid=1-s2.0-S0169260724003882-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Latent disentanglement in mesh variational autoencoders improves the diagnosis of craniofacial syndromes and aids surgical planning\",\"authors\":\"Simone Foti ,&nbsp;Alexander J. Rickart ,&nbsp;Bongjin Koo ,&nbsp;Eimear O’ Sullivan ,&nbsp;Lara S. van de Lande ,&nbsp;Athanasios Papaioannou ,&nbsp;Roman Khonsari ,&nbsp;Danail Stoyanov ,&nbsp;N.u. Owase Jeelani ,&nbsp;Silvia Schievano ,&nbsp;David J. Dunaway ,&nbsp;Matthew J. Clarkson\",\"doi\":\"10.1016/j.cmpb.2024.108395\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Background and objective:</h3><p>The use of deep learning to undertake shape analysis of the complexities of the human head holds great promise. However, there have traditionally been a number of barriers to accurate modelling, especially when operating on both a global and local level.</p></div><div><h3>Methods:</h3><p>In this work, we will discuss the application of the Swap Disentangled Variational Autoencoder (SD-VAE) with relevance to Crouzon, Apert and Muenke syndromes. The model is trained on a dataset of 3D meshes of healthy and syndromic patients which was increased in size with a novel data augmentation technique based on spectral interpolation. Thanks to its semantically meaningful and disentangled latent representation, SD-VAE is used to analyse and generate head shapes while considering the influence of different anatomical sub-units.</p></div><div><h3>Results:</h3><p>Although syndrome classification is performed on the entire mesh, it is also possible, for the first time, to analyse the influence of each region of the head on the syndromic phenotype. By manipulating specific parameters of the generative model, and producing procedure-specific new shapes, it is also possible to approximate the outcome of a range of craniofacial surgical procedures.</p></div><div><h3>Conclusion:</h3><p>This work opens new avenues to advance diagnosis, aids surgical planning and allows for the objective evaluation of surgical outcomes. Our code is available at <span><span>github.com/simofoti/CraniofacialSD-VAE</span><svg><path></path></svg></span>.</p></div>\",\"PeriodicalId\":10624,\"journal\":{\"name\":\"Computer methods and programs in biomedicine\",\"volume\":\"256 \",\"pages\":\"Article 108395\"},\"PeriodicalIF\":4.9000,\"publicationDate\":\"2024-08-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S0169260724003882/pdfft?md5=7bb50e4fab3ca51c5867372f1437b450&pid=1-s2.0-S0169260724003882-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer methods and programs in biomedicine\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0169260724003882\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer methods and programs in biomedicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169260724003882","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

摘要

背景和目的:利用深度学习对人类头部的复杂性进行形状分析大有可为。方法:在这项工作中,我们将讨论交换离散变异自动编码器(SD-VAE)在克鲁宗、阿珀特和穆恩克综合征中的应用。该模型在健康和综合征患者的三维网格数据集上进行了训练,该数据集通过基于光谱插值的新型数据扩增技术扩大了规模。结果:虽然综合征分类是在整个网格上进行的,但也首次实现了分析头部每个区域对综合征表型的影响。结论:这项工作开辟了推进诊断的新途径,有助于手术规划,并可对手术结果进行客观评估。我们的代码位于 github.com/simofoti/CraniofacialSD-VAE。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Latent disentanglement in mesh variational autoencoders improves the diagnosis of craniofacial syndromes and aids surgical planning

Background and objective:

The use of deep learning to undertake shape analysis of the complexities of the human head holds great promise. However, there have traditionally been a number of barriers to accurate modelling, especially when operating on both a global and local level.

Methods:

In this work, we will discuss the application of the Swap Disentangled Variational Autoencoder (SD-VAE) with relevance to Crouzon, Apert and Muenke syndromes. The model is trained on a dataset of 3D meshes of healthy and syndromic patients which was increased in size with a novel data augmentation technique based on spectral interpolation. Thanks to its semantically meaningful and disentangled latent representation, SD-VAE is used to analyse and generate head shapes while considering the influence of different anatomical sub-units.

Results:

Although syndrome classification is performed on the entire mesh, it is also possible, for the first time, to analyse the influence of each region of the head on the syndromic phenotype. By manipulating specific parameters of the generative model, and producing procedure-specific new shapes, it is also possible to approximate the outcome of a range of craniofacial surgical procedures.

Conclusion:

This work opens new avenues to advance diagnosis, aids surgical planning and allows for the objective evaluation of surgical outcomes. Our code is available at github.com/simofoti/CraniofacialSD-VAE.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
期刊最新文献
Editorial Board A comprehensive benchmarking of a U-Net based model for midbrain auto-segmentation on transcranial sonography DeepForest-HTP: A novel deep forest approach for predicting antihypertensive peptides Positional encoding-guided transformer-based multiple instance learning for histopathology whole slide images classification Localizing the seizure onset zone and predicting the surgery outcomes in patients with drug-resistant epilepsy: A new approach based on the causal network
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1