细菌ι-CAs。

Q3 Biochemistry, Genetics and Molecular Biology Enzymes Pub Date : 2024-01-01 Epub Date: 2024-06-01 DOI:10.1016/bs.enz.2024.05.003
Clemente Capasso, Claudiu T Supuran
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引用次数: 0

摘要

最近的研究发现了一类新型碳酸酐酶(CAs),命名为ι-CA,主要存在于海洋硅藻、真核藻类、蓝藻、细菌和古细菌的基因组中。由于其独特的生化特性和进化意义,该类蛋白备受关注。通过生物信息学分析,发现 LCIP63 蛋白是海洋硅藻 Thalassiosira pseudonana 中潜在的 ι-CA。随后的生化鉴定显示,LCIP63 具有 CA 活性,而且它对锰离子的偏好超过了锌,这表明它在进化过程中适应了海洋环境。对细菌ι-CAs 的进一步研究表明,以伯克霍尔德属领地ι-CA(BteCAι)为代表的细菌ι-CAs 具有催化效率,并且对磺胺和无机阴离子抑制剂--经典 CA 抑制剂(CAIs)--非常敏感。根据 COG4875 和 COG4337 结构域的序列,ι-CA 被分为两种变体类型,这标志着我们对这些酶的认识取得了重大进展。此后,对真核微藻和蓝藻中的 COG4337 ι-CAs 进行的结构分析表明了其独特的结构排列和新颖的催化机制,其中涉及在没有金属离子辅助因子的情况下促进 CO2 水合的特定残基,这偏离了典型的 CA 行为。这些发现强调了 ι-CA 类化合物的生化多样性,并突出了其作为新型抗菌剂靶标的潜力。总之,ι-CA 特性和机制的阐明增进了我们对不同生物体内碳代谢的了解,并强调了 CA 演化和功能的复杂性。
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Bacterial ι-CAs.

Recent research has identified a novel class of carbonic anhydrases (CAs), designated ι-CA, predominantly found in marine diatoms, eukaryotic algae, cyanobacteria, bacteria, and archaea genomes. This class has garnered attention owing to its unique biochemical properties and evolutionary significance. Through bioinformatic analyses, LCIP63, a protein initially annotated with an unknown function, was identified as a potential ι-CA in the marine diatom Thalassiosira pseudonana. Subsequent biochemical characterization revealed that LCIP63 has CA activity and its preference for manganese ions over zinc, indicative of evolutionary adaptation to marine environments. Further exploration of bacterial ι-CAs, exemplified by Burkholderia territorii ι-CA (BteCAι), demonstrated catalytic efficiency and sensitivity to sulfonamide and inorganic anion inhibitors, the classical CA inhibitors (CAIs). The classification of ι-CAs into two variant types based on their sequences, distinguished by the COG4875 and COG4337 domains, marks a significant advancement in our understanding of these enzymes. Structural analyses of COG4337 ι-CAs from eukaryotic microalgae and cyanobacteria thereafter revealed a distinctive structural arrangement and a novel catalytic mechanism involving specific residues facilitating CO2 hydration in the absence of metal ion cofactors, deviating from canonical CA behavior. These findings underscore the biochemical diversity within the ι-CA class and highlight its potential as a target for novel antimicrobial agents. Overall, the elucidation of ι-CA properties and mechanisms advances our knowledge of carbon metabolism in diverse organisms and underscores the complexity of CA evolution and function.

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来源期刊
Enzymes
Enzymes Biochemistry, Genetics and Molecular Biology-Biotechnology
CiteScore
4.30
自引率
0.00%
发文量
10
期刊最新文献
Bacterial α-CAs: a biochemical and structural overview. Bacterial β-carbonic anhydrases. Bacterial γ-carbonic anhydrases. Bacterial ι-CAs. Carbonic anhydrases in bacterial pathogens.
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