用于增强视网膜年龄预测的基础模型驱动分布式学习。

IF 4.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS Journal of the American Medical Informatics Association Pub Date : 2024-11-01 DOI:10.1093/jamia/ocae220
Christopher Nielsen, Raissa Souza, Matthias Wilms, Nils D Forkert
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引用次数: 0

摘要

目的:视网膜年龄差距(RAG)正在成为人体各种疾病的潜在生物标志物,但它的实用性取决于能否从眼底图像准确预测生物视网膜年龄的机器学习模型。然而,由于可能缺乏各种训练数据,训练通用模型的工作受到了阻碍。为了克服这些障碍,本研究开发了一种新颖且计算效率高的分布式学习框架,用于视网膜年龄预测:所提出的框架采用了具有内存效率的 8 位量化版 RETFound(一种用于视网膜图像分析的前沿基础模型)来提取眼底图像的特征。然后利用这些特征来训练预测视网膜年龄的高效线性回归头模型。该框架探索了联合学习(FL)和旅行模型(TM)方法,用于线性回归头的分布式训练。为了评估该框架,我们使用英国生物库的眼底图像数据模拟了一个客户端网络。此外,我们还使用了英国生物库和巴西多标签眼科数据集(BRSET)中的 1 型糖尿病患者数据,以探索所开发方法的临床实用性:我们的研究结果表明,所开发的分布式学习框架在视网膜年龄预测方面的性能与集中式方法相当,FL 和 TM 的性能相似(集中式学习的平均绝对误差为 3.57 ± 0.18 岁,TM 为 3.60 ± 0.16 岁,FL 为 3.63 ± 0.19 岁)。值得注意的是,与 FL 相比,TM 在局部更新较少的情况下收敛。此外,在英国生物库和 BRSET 数据集的所有模型中,1 型糖尿病患者的 RAG 值都明显高于健康对照组(P 讨论):所开发的分布式学习框架具有很高的计算和内存效率,因此非常适合资源有限的环境:该框架能够整合来自代表性不足人群的数据,用于训练视网膜年龄预测模型,这将极大地提高 RAG 作为重要疾病生物标志物的可及性。
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Foundation model-driven distributed learning for enhanced retinal age prediction.

Objectives: The retinal age gap (RAG) is emerging as a potential biomarker for various diseases of the human body, yet its utility depends on machine learning models capable of accurately predicting biological retinal age from fundus images. However, training generalizable models is hindered by potential shortages of diverse training data. To overcome these obstacles, this work develops a novel and computationally efficient distributed learning framework for retinal age prediction.

Materials and methods: The proposed framework employs a memory-efficient 8-bit quantized version of RETFound, a cutting-edge foundation model for retinal image analysis, to extract features from fundus images. These features are then used to train an efficient linear regression head model for predicting retinal age. The framework explores federated learning (FL) as well as traveling model (TM) approaches for distributed training of the linear regression head. To evaluate this framework, we simulate a client network using fundus image data from the UK Biobank. Additionally, data from patients with type 1 diabetes from the UK Biobank and the Brazilian Multilabel Ophthalmological Dataset (BRSET) were utilized to explore the clinical utility of the developed methods.

Results: Our findings reveal that the developed distributed learning framework achieves retinal age prediction performance on par with centralized methods, with FL and TM providing similar performance (mean absolute error of 3.57 ± 0.18 years for centralized learning, 3.60 ± 0.16 years for TM, and 3.63 ± 0.19 years for FL). Notably, the TM was found to converge with fewer local updates than FL. Moreover, patients with type 1 diabetes exhibited significantly higher RAG values than healthy controls in all models, for both the UK Biobank and BRSET datasets (P < .001).

Discussion: The high computational and memory efficiency of the developed distributed learning framework makes it well suited for resource-constrained environments.

Conclusion: The capacity of this framework to integrate data from underrepresented populations for training of retinal age prediction models could significantly enhance the accessibility of the RAG as an important disease biomarker.

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来源期刊
Journal of the American Medical Informatics Association
Journal of the American Medical Informatics Association 医学-计算机:跨学科应用
CiteScore
14.50
自引率
7.80%
发文量
230
审稿时长
3-8 weeks
期刊介绍: JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.
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