新的饮用水基因组目录确定了适应消毒饮用水系统的全球分布的细菌基因。

IF 10.8 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL 环境科学与技术 Pub Date : 2024-09-17 Epub Date: 2024-09-05 DOI:10.1021/acs.est.4c05086
Ashwin S Sudarshan, Zihan Dai, Marco Gabrielli, Solize Oosthuizen-Vosloo, Konstantinos T Konstantinidis, Ameet J Pinto
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引用次数: 0

摘要

通过基因组解析深入了解饮用水微生物组的结构和功能可以促进饮用水质量的有效管理。为此,我们构建并整理了来自全球饮用水分配系统的数千个元基因组和分离基因组,以开发饮用水基因组目录(DWGC)。由于来自非消毒系统的元基因组极少,目前的 DWGC 不成比例地代表了消毒饮用水系统。利用 DWGC,我们确定了饮用水微生物组的核心菌属,包括根瘤菌目中的一个菌属(UBA4765),该菌属在消毒过的饮用水系统中经常被检测到并且含量很高。我们证明,在以前基于扩增子测序的饮用水微生物组调查中,该属被广泛检测到,但却被错误地分类。此外,我们还发现,在本研究中 75% 的饮用水系统中都检测到了该属的单基因组变体(基因组变异体)。我们将这种未培养的细菌命名为 "Raskinella chloraquaticus",并将该属描述为 "Raskinella"(经 SeqCode 认可)。代谢注释和基于建模的预测表明,这种细菌能够进行坏死性生长,能够代谢卤代化合物,在基于生物膜的环境中增殖,并有明显的消毒介导选择迹象。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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New Drinking Water Genome Catalog Identifies a Globally Distributed Bacterial Genus Adapted to Disinfected Drinking Water Systems.

Genome-resolved insights into the structure and function of the drinking water microbiome can advance the effective management of drinking water quality. To enable this, we constructed and curated thousands of metagenome-assembled and isolate genomes from drinking water distribution systems globally to develop a Drinking Water Genome Catalog (DWGC). The current DWGC disproportionately represents disinfected drinking water systems due to a paucity of metagenomes from nondisinfected systems. Using the DWGC, we identify core genera of the drinking water microbiome including a genus (UBA4765) within the order Rhizobiales that is frequently detected and highly abundant in disinfected drinking water systems. We demonstrate that this genus has been widely detected but incorrectly classified in previous amplicon sequencing-based investigations of the drinking water microbiome. Further, we show that a single genome variant (genomovar) within this genus is detected in 75% of drinking water systems included in this study. We propose a name for this uncultured bacterium as "Raskinella chloraquaticus" and describe the genus as "Raskinella" (endorsed by SeqCode). Metabolic annotation and modeling-based predictions indicate that this bacterium is capable of necrotrophic growth, is able to metabolize halogenated compounds, proliferates in a biofilm-based environment, and shows clear indications of disinfection-mediated selection.

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来源期刊
环境科学与技术
环境科学与技术 环境科学-工程:环境
CiteScore
17.50
自引率
9.60%
发文量
12359
审稿时长
2.8 months
期刊介绍: Environmental Science & Technology (ES&T) is a co-sponsored academic and technical magazine by the Hubei Provincial Environmental Protection Bureau and the Hubei Provincial Academy of Environmental Sciences. Environmental Science & Technology (ES&T) holds the status of Chinese core journals, scientific papers source journals of China, Chinese Science Citation Database source journals, and Chinese Academic Journal Comprehensive Evaluation Database source journals. This publication focuses on the academic field of environmental protection, featuring articles related to environmental protection and technical advancements.
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