Zhujun Zhu , Pengfei Cheng , Yanrong Li , Xiaojun Yan , Haimin Chen
{"title":"全基因组范围内 NADPH 氧化酶基因的鉴定和表达分析:对生物和非生物胁迫的响应以及海桐异形世代交替期间 NADPH 氧化酶基因的表达分析","authors":"Zhujun Zhu , Pengfei Cheng , Yanrong Li , Xiaojun Yan , Haimin Chen","doi":"10.1016/j.algal.2024.103696","DOIUrl":null,"url":null,"abstract":"<div><p>Algae respond rapidly with a respiratory oxidative burst during and after exposure to numerous environmental stresses. However, NADPH oxidase (Nox) homologs related to the generation of reactive oxygen species by algae are still poorly understood. In the present study, we identified 46 Nox homologs in eight red algae species; these Noxs possessed key functional domains similar to plant respiratory burst oxidase homologs but most of them were clustered into an independent clade in evolution. Furthermore, the cis-acting regulatory elements, transcription profiles, transcription factors co-expression correlation and differential expression of <em>Pyropia haitanensis nox</em> genes (<em>Phnoxs</em>) were detected. Results revealed that abundant elements involved in phytohormone responsiveness, abiotic stress induction, light regulation and transcription factor binding were harbored at the promoter region of <em>Phnoxs</em>. And they possessed differential transcript profiles during alternating heteromorphic generations. <em>Phnox5C</em> and <em>2C</em> were the main genes expressed in free-living conchocelis and gametophyte, respectively, and their expression might be regulated by different transcription factors; an implication of their importance in nori growth and carpospore development. In addition, <em>Phnox2C</em>, <em>4</em> and <em>5A</em> were significantly up-regulated after flg22 or oligoagar exposure, indicating they may provide resistance to pathogens. Conversely, <em>Phnox2A</em>, <em>2C</em>, <em>4</em> and <em>5A</em> responded positively to mechanical damage or drought stress. The findings presented in this study could be valuable for further elucidating the functions and regulatory mechanisms of NADPH oxidases during the development and adaptation of red algae to diverse stresses.</p></div>","PeriodicalId":7855,"journal":{"name":"Algal Research-Biomass Biofuels and Bioproducts","volume":"83 ","pages":"Article 103696"},"PeriodicalIF":4.6000,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-wide identification and expression analysis of NADPH oxidase genes in response to biotic and abiotic stresses, and during alternating heteromorphic generations in Pyropia haitanensis\",\"authors\":\"Zhujun Zhu , Pengfei Cheng , Yanrong Li , Xiaojun Yan , Haimin Chen\",\"doi\":\"10.1016/j.algal.2024.103696\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Algae respond rapidly with a respiratory oxidative burst during and after exposure to numerous environmental stresses. However, NADPH oxidase (Nox) homologs related to the generation of reactive oxygen species by algae are still poorly understood. In the present study, we identified 46 Nox homologs in eight red algae species; these Noxs possessed key functional domains similar to plant respiratory burst oxidase homologs but most of them were clustered into an independent clade in evolution. Furthermore, the cis-acting regulatory elements, transcription profiles, transcription factors co-expression correlation and differential expression of <em>Pyropia haitanensis nox</em> genes (<em>Phnoxs</em>) were detected. Results revealed that abundant elements involved in phytohormone responsiveness, abiotic stress induction, light regulation and transcription factor binding were harbored at the promoter region of <em>Phnoxs</em>. And they possessed differential transcript profiles during alternating heteromorphic generations. <em>Phnox5C</em> and <em>2C</em> were the main genes expressed in free-living conchocelis and gametophyte, respectively, and their expression might be regulated by different transcription factors; an implication of their importance in nori growth and carpospore development. In addition, <em>Phnox2C</em>, <em>4</em> and <em>5A</em> were significantly up-regulated after flg22 or oligoagar exposure, indicating they may provide resistance to pathogens. Conversely, <em>Phnox2A</em>, <em>2C</em>, <em>4</em> and <em>5A</em> responded positively to mechanical damage or drought stress. The findings presented in this study could be valuable for further elucidating the functions and regulatory mechanisms of NADPH oxidases during the development and adaptation of red algae to diverse stresses.</p></div>\",\"PeriodicalId\":7855,\"journal\":{\"name\":\"Algal Research-Biomass Biofuels and Bioproducts\",\"volume\":\"83 \",\"pages\":\"Article 103696\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-09-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Algal Research-Biomass Biofuels and Bioproducts\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2211926424003084\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Algal Research-Biomass Biofuels and Bioproducts","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2211926424003084","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Genome-wide identification and expression analysis of NADPH oxidase genes in response to biotic and abiotic stresses, and during alternating heteromorphic generations in Pyropia haitanensis
Algae respond rapidly with a respiratory oxidative burst during and after exposure to numerous environmental stresses. However, NADPH oxidase (Nox) homologs related to the generation of reactive oxygen species by algae are still poorly understood. In the present study, we identified 46 Nox homologs in eight red algae species; these Noxs possessed key functional domains similar to plant respiratory burst oxidase homologs but most of them were clustered into an independent clade in evolution. Furthermore, the cis-acting regulatory elements, transcription profiles, transcription factors co-expression correlation and differential expression of Pyropia haitanensis nox genes (Phnoxs) were detected. Results revealed that abundant elements involved in phytohormone responsiveness, abiotic stress induction, light regulation and transcription factor binding were harbored at the promoter region of Phnoxs. And they possessed differential transcript profiles during alternating heteromorphic generations. Phnox5C and 2C were the main genes expressed in free-living conchocelis and gametophyte, respectively, and their expression might be regulated by different transcription factors; an implication of their importance in nori growth and carpospore development. In addition, Phnox2C, 4 and 5A were significantly up-regulated after flg22 or oligoagar exposure, indicating they may provide resistance to pathogens. Conversely, Phnox2A, 2C, 4 and 5A responded positively to mechanical damage or drought stress. The findings presented in this study could be valuable for further elucidating the functions and regulatory mechanisms of NADPH oxidases during the development and adaptation of red algae to diverse stresses.
期刊介绍:
Algal Research is an international phycology journal covering all areas of emerging technologies in algae biology, biomass production, cultivation, harvesting, extraction, bioproducts, biorefinery, engineering, and econometrics. Algae is defined to include cyanobacteria, microalgae, and protists and symbionts of interest in biotechnology. The journal publishes original research and reviews for the following scope: algal biology, including but not exclusive to: phylogeny, biodiversity, molecular traits, metabolic regulation, and genetic engineering, algal cultivation, e.g. phototrophic systems, heterotrophic systems, and mixotrophic systems, algal harvesting and extraction systems, biotechnology to convert algal biomass and components into biofuels and bioproducts, e.g., nutraceuticals, pharmaceuticals, animal feed, plastics, etc. algal products and their economic assessment