Kexin Wang , Yinhu Jiang , Ying Zhou, Jiale Ma, Qimiao Xu, Lu Xu, Jian He, Jiguo Qiu
{"title":"由 Pigmentiphaga sp. YJ18 中独特的 qut 簇介导的喹啉酸降解","authors":"Kexin Wang , Yinhu Jiang , Ying Zhou, Jiale Ma, Qimiao Xu, Lu Xu, Jian He, Jiguo Qiu","doi":"10.1016/j.ibiod.2024.105911","DOIUrl":null,"url":null,"abstract":"<div><p>Quinolinic acid (QA), a natural pyridine derivative produced through the kynurenine pathway in living organisms, is linked to various neurodegenerative diseases due to its neurotoxicity. Although some bacteria have been reported to degrade QA, the underlying molecular mechanisms remain incomplete. In this study, a unique <em>qut</em> cluster responsible for QA degradation is identified in <em>Pigmentiphaga</em> sp. YJ18. The strain YJ18 could degrade and utilize QA as the sole carbon source for growth. Strain YJ18 efficiently degrade 100 mg/L QA within 48 h at 30 °C, pH 7.0, and 1% NaCl. The gene-disruption results showed that <em>qutE</em> is involved in the initial step of QA degradation, while <em>qutI</em> mediate the conversion of 6-hydroxypicolinic acid (6HPA) to downstream metabolites. Furthermore, the degradation of QA is negatively regulated by the MarR family transcriptional regulator QutR, which shared 61.97% amino similarity with PicR in <em>Alcaligenes faecalis</em>. The <em>qut</em> gene cluster consists of three transcriptional units: <em>qutABCDEF</em>, <em>qutGHIJKLMNO</em>, and <em>qutR</em>. Electrophoretic mobility shift assay results demonstrated that QutR binds to the promoter regions of the <em>qutA</em>, <em>qutG</em>, and <em>qutR</em>, respectively, sharing a partial palindromic motif 5′-TCAG-N4-CTNN-3’. Bioinformatics analysis reveals that the unique <em>qut</em> cluster, co-evolving with <em>Pigmentiphaga</em> strains, integrating the <em>qui</em> and <em>pic</em> clusters which are responsible for degradation of QA to 6HPA and picolinic acid to fumaric acid, respectively. Overall, this study provides a newly isolated strain capable of degrading QA with a unique <em>qut</em> cluster and valuable molecular insights into the diversity of QA catabolic mechanisms in bacteria.</p></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"195 ","pages":"Article 105911"},"PeriodicalIF":4.1000,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Quinolinic acid degradation mediated by a unique qut cluster in Pigmentiphaga sp. YJ18\",\"authors\":\"Kexin Wang , Yinhu Jiang , Ying Zhou, Jiale Ma, Qimiao Xu, Lu Xu, Jian He, Jiguo Qiu\",\"doi\":\"10.1016/j.ibiod.2024.105911\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Quinolinic acid (QA), a natural pyridine derivative produced through the kynurenine pathway in living organisms, is linked to various neurodegenerative diseases due to its neurotoxicity. Although some bacteria have been reported to degrade QA, the underlying molecular mechanisms remain incomplete. In this study, a unique <em>qut</em> cluster responsible for QA degradation is identified in <em>Pigmentiphaga</em> sp. YJ18. The strain YJ18 could degrade and utilize QA as the sole carbon source for growth. Strain YJ18 efficiently degrade 100 mg/L QA within 48 h at 30 °C, pH 7.0, and 1% NaCl. The gene-disruption results showed that <em>qutE</em> is involved in the initial step of QA degradation, while <em>qutI</em> mediate the conversion of 6-hydroxypicolinic acid (6HPA) to downstream metabolites. Furthermore, the degradation of QA is negatively regulated by the MarR family transcriptional regulator QutR, which shared 61.97% amino similarity with PicR in <em>Alcaligenes faecalis</em>. The <em>qut</em> gene cluster consists of three transcriptional units: <em>qutABCDEF</em>, <em>qutGHIJKLMNO</em>, and <em>qutR</em>. Electrophoretic mobility shift assay results demonstrated that QutR binds to the promoter regions of the <em>qutA</em>, <em>qutG</em>, and <em>qutR</em>, respectively, sharing a partial palindromic motif 5′-TCAG-N4-CTNN-3’. Bioinformatics analysis reveals that the unique <em>qut</em> cluster, co-evolving with <em>Pigmentiphaga</em> strains, integrating the <em>qui</em> and <em>pic</em> clusters which are responsible for degradation of QA to 6HPA and picolinic acid to fumaric acid, respectively. Overall, this study provides a newly isolated strain capable of degrading QA with a unique <em>qut</em> cluster and valuable molecular insights into the diversity of QA catabolic mechanisms in bacteria.</p></div>\",\"PeriodicalId\":13643,\"journal\":{\"name\":\"International Biodeterioration & Biodegradation\",\"volume\":\"195 \",\"pages\":\"Article 105911\"},\"PeriodicalIF\":4.1000,\"publicationDate\":\"2024-09-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Biodeterioration & Biodegradation\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0964830524001823\",\"RegionNum\":2,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Biodeterioration & Biodegradation","FirstCategoryId":"93","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0964830524001823","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Quinolinic acid degradation mediated by a unique qut cluster in Pigmentiphaga sp. YJ18
Quinolinic acid (QA), a natural pyridine derivative produced through the kynurenine pathway in living organisms, is linked to various neurodegenerative diseases due to its neurotoxicity. Although some bacteria have been reported to degrade QA, the underlying molecular mechanisms remain incomplete. In this study, a unique qut cluster responsible for QA degradation is identified in Pigmentiphaga sp. YJ18. The strain YJ18 could degrade and utilize QA as the sole carbon source for growth. Strain YJ18 efficiently degrade 100 mg/L QA within 48 h at 30 °C, pH 7.0, and 1% NaCl. The gene-disruption results showed that qutE is involved in the initial step of QA degradation, while qutI mediate the conversion of 6-hydroxypicolinic acid (6HPA) to downstream metabolites. Furthermore, the degradation of QA is negatively regulated by the MarR family transcriptional regulator QutR, which shared 61.97% amino similarity with PicR in Alcaligenes faecalis. The qut gene cluster consists of three transcriptional units: qutABCDEF, qutGHIJKLMNO, and qutR. Electrophoretic mobility shift assay results demonstrated that QutR binds to the promoter regions of the qutA, qutG, and qutR, respectively, sharing a partial palindromic motif 5′-TCAG-N4-CTNN-3’. Bioinformatics analysis reveals that the unique qut cluster, co-evolving with Pigmentiphaga strains, integrating the qui and pic clusters which are responsible for degradation of QA to 6HPA and picolinic acid to fumaric acid, respectively. Overall, this study provides a newly isolated strain capable of degrading QA with a unique qut cluster and valuable molecular insights into the diversity of QA catabolic mechanisms in bacteria.
期刊介绍:
International Biodeterioration and Biodegradation publishes original research papers and reviews on the biological causes of deterioration or degradation.