He Wang, Xinbo Li, Siyu Zhou, Wendi Guo, Zhao Wang, Linlin Sun, Zhongyi Zhao, Yanyan Han, Sanyuan Zhang, Jieping Lv, Yi Ping, Zhe Wang
{"title":"单细胞 RNA-seq 和大量 RNA-seq 的综合分析揭示了宫颈癌中不同肿瘤微环境免疫图谱介导的 MMP 表达模式。","authors":"He Wang, Xinbo Li, Siyu Zhou, Wendi Guo, Zhao Wang, Linlin Sun, Zhongyi Zhao, Yanyan Han, Sanyuan Zhang, Jieping Lv, Yi Ping, Zhe Wang","doi":"10.7150/jca.96429","DOIUrl":null,"url":null,"abstract":"<p><p><b>Background:</b> Few studies have analyzed the effect of <i>matrix metalloproteinase</i> (<i>MMP</i>) expression patterns on the tumor microenvironment (TME) during development of cervical cancer (CC). <b>Methods:</b> We elucidated the landscape and score of <i>MMP</i> expression in CC using single-cell RNA sequencing (scRNA-seq) and RNA sequencing datasets. Further, we aimed the MMPscore to probe the infiltration of immune cells. Further, <i>MMP</i> expression was measured by quantitative Real-Time Polymerase Chain Reaction (qRT-PCR). <b>Results:</b> We found <i>MMPs</i> were cell-type specific expressed in diverse types of CC cells, regulating the relative pathways of CC progression. Two distinct <i>MMP</i> expression patterns that associated infiltrated tumor microenvironment (TME) were identified. We discovered <i>MMP</i> expression patterns can predict the stage of tumor, subtype, stromal activity in the TME, genetic variation, and patient outcome. Patients with high MMPscore benefited from significantly better treatment and clinical outcomes. <b>Conclusion:</b> These results indicate high MMPscore in diverse cell types may regulate immune response and improve the survival of patients with CC, which assist in developing more effective immunization strategies.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 16","pages":"5258-5276"},"PeriodicalIF":3.3000,"publicationDate":"2024-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11375545/pdf/","citationCount":"0","resultStr":"{\"title\":\"Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals <i>MMP</i> mediated expression patterns by distinct tumor microenvironment immune profiles in cervical cancer.\",\"authors\":\"He Wang, Xinbo Li, Siyu Zhou, Wendi Guo, Zhao Wang, Linlin Sun, Zhongyi Zhao, Yanyan Han, Sanyuan Zhang, Jieping Lv, Yi Ping, Zhe Wang\",\"doi\":\"10.7150/jca.96429\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Background:</b> Few studies have analyzed the effect of <i>matrix metalloproteinase</i> (<i>MMP</i>) expression patterns on the tumor microenvironment (TME) during development of cervical cancer (CC). <b>Methods:</b> We elucidated the landscape and score of <i>MMP</i> expression in CC using single-cell RNA sequencing (scRNA-seq) and RNA sequencing datasets. Further, we aimed the MMPscore to probe the infiltration of immune cells. Further, <i>MMP</i> expression was measured by quantitative Real-Time Polymerase Chain Reaction (qRT-PCR). <b>Results:</b> We found <i>MMPs</i> were cell-type specific expressed in diverse types of CC cells, regulating the relative pathways of CC progression. Two distinct <i>MMP</i> expression patterns that associated infiltrated tumor microenvironment (TME) were identified. We discovered <i>MMP</i> expression patterns can predict the stage of tumor, subtype, stromal activity in the TME, genetic variation, and patient outcome. Patients with high MMPscore benefited from significantly better treatment and clinical outcomes. <b>Conclusion:</b> These results indicate high MMPscore in diverse cell types may regulate immune response and improve the survival of patients with CC, which assist in developing more effective immunization strategies.</p>\",\"PeriodicalId\":15183,\"journal\":{\"name\":\"Journal of Cancer\",\"volume\":\"15 16\",\"pages\":\"5258-5276\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-08-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11375545/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Cancer\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.7150/jca.96429\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Cancer","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.7150/jca.96429","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"ONCOLOGY","Score":null,"Total":0}
Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals MMP mediated expression patterns by distinct tumor microenvironment immune profiles in cervical cancer.
Background: Few studies have analyzed the effect of matrix metalloproteinase (MMP) expression patterns on the tumor microenvironment (TME) during development of cervical cancer (CC). Methods: We elucidated the landscape and score of MMP expression in CC using single-cell RNA sequencing (scRNA-seq) and RNA sequencing datasets. Further, we aimed the MMPscore to probe the infiltration of immune cells. Further, MMP expression was measured by quantitative Real-Time Polymerase Chain Reaction (qRT-PCR). Results: We found MMPs were cell-type specific expressed in diverse types of CC cells, regulating the relative pathways of CC progression. Two distinct MMP expression patterns that associated infiltrated tumor microenvironment (TME) were identified. We discovered MMP expression patterns can predict the stage of tumor, subtype, stromal activity in the TME, genetic variation, and patient outcome. Patients with high MMPscore benefited from significantly better treatment and clinical outcomes. Conclusion: These results indicate high MMPscore in diverse cell types may regulate immune response and improve the survival of patients with CC, which assist in developing more effective immunization strategies.
期刊介绍:
Journal of Cancer is an open access, peer-reviewed journal with broad scope covering all areas of cancer research, especially novel concepts, new methods, new regimens, new therapeutic agents, and alternative approaches for early detection and intervention of cancer. The Journal is supported by an international editorial board consisting of a distinguished team of cancer researchers. Journal of Cancer aims at rapid publication of high quality results in cancer research while maintaining rigorous peer-review process.