{"title":"利用路径权重采样精确计算转移熵","authors":"Avishek Das, Pieter Rein ten Wolde","doi":"arxiv-2409.01650","DOIUrl":null,"url":null,"abstract":"Information processing in networks entails a dynamical transfer of\ninformation between stochastic variables. Transfer entropy is widely used for\nquantification of the directional transfer of information between input and\noutput trajectories. However, currently there is no exact technique to quantify\ntransfer entropy given the dynamical model of a general network. Here we\nintroduce an exact computational algorithm, Transfer Entropy-Path Weight\nSampling (TE-PWS), to quantify transfer entropy and its variants in an\narbitrary network in the presence of multiple hidden variables, nonlinearity,\ntransient conditions, and feedback. TE-PWS extends a recently introduced\nalgorithm Path Weight Sampling (PWS) and uses techniques from the statistical\nphysics of polymers and trajectory sampling. We apply TE-PWS to linear and\nnonlinear systems to reveal how transfer entropy can overcome naive\napplications of data processing inequalities in presence of feedback.","PeriodicalId":501325,"journal":{"name":"arXiv - QuanBio - Molecular Networks","volume":"3 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exact computation of Transfer Entropy with Path Weight Sampling\",\"authors\":\"Avishek Das, Pieter Rein ten Wolde\",\"doi\":\"arxiv-2409.01650\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Information processing in networks entails a dynamical transfer of\\ninformation between stochastic variables. Transfer entropy is widely used for\\nquantification of the directional transfer of information between input and\\noutput trajectories. However, currently there is no exact technique to quantify\\ntransfer entropy given the dynamical model of a general network. Here we\\nintroduce an exact computational algorithm, Transfer Entropy-Path Weight\\nSampling (TE-PWS), to quantify transfer entropy and its variants in an\\narbitrary network in the presence of multiple hidden variables, nonlinearity,\\ntransient conditions, and feedback. TE-PWS extends a recently introduced\\nalgorithm Path Weight Sampling (PWS) and uses techniques from the statistical\\nphysics of polymers and trajectory sampling. We apply TE-PWS to linear and\\nnonlinear systems to reveal how transfer entropy can overcome naive\\napplications of data processing inequalities in presence of feedback.\",\"PeriodicalId\":501325,\"journal\":{\"name\":\"arXiv - QuanBio - Molecular Networks\",\"volume\":\"3 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Molecular Networks\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2409.01650\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Molecular Networks","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.01650","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Exact computation of Transfer Entropy with Path Weight Sampling
Information processing in networks entails a dynamical transfer of
information between stochastic variables. Transfer entropy is widely used for
quantification of the directional transfer of information between input and
output trajectories. However, currently there is no exact technique to quantify
transfer entropy given the dynamical model of a general network. Here we
introduce an exact computational algorithm, Transfer Entropy-Path Weight
Sampling (TE-PWS), to quantify transfer entropy and its variants in an
arbitrary network in the presence of multiple hidden variables, nonlinearity,
transient conditions, and feedback. TE-PWS extends a recently introduced
algorithm Path Weight Sampling (PWS) and uses techniques from the statistical
physics of polymers and trajectory sampling. We apply TE-PWS to linear and
nonlinear systems to reveal how transfer entropy can overcome naive
applications of data processing inequalities in presence of feedback.