Paul N. Patrone, Lili Wang, Sheng Lin-Gibson, Anthony J. Kearsley
{"title":"抗体测量的不确定性量化:物理原理及对标准化的影响","authors":"Paul N. Patrone, Lili Wang, Sheng Lin-Gibson, Anthony J. Kearsley","doi":"arxiv-2409.00191","DOIUrl":null,"url":null,"abstract":"Harmonizing serology measurements is critical for identifying reference\nmaterials that permit standardization and comparison of results across\ndifferent diagnostic platforms. However, the theoretical foundations of such\ntasks have yet to be fully explored in the context of antibody thermodynamics\nand uncertainty quantification (UQ). This has restricted the usefulness of\nstandards currently deployed and limited the scope of materials considered as\nviable reference material. To address these problems, we develop rigorous\ntheories of antibody normalization and harmonization, as well as formulate a\nprobabilistic framework for defining correlates of protection. We begin by\nproposing a mathematical definition of harmonization equipped with structure\nneeded to quantify uncertainty associated with the choice of standard, assay,\netc. We then show how a thermodynamic description of serology measurements (i)\nrelates this structure to the Gibbs free-energy of antibody binding, and\nthereby (ii) induces a regression analysis that directly harmonizes\nmeasurements. We supplement this with a novel, optimization-based normalization\n(not harmonization!) method that checks for consistency between reference and\nsample dilution curves. Last, we relate these analyses to uncertainty\npropagation techniques to estimate correlates of protection. A key result of\nthese analyses is that under physically reasonable conditions, the choice of\nreference material does not increase uncertainty associated with harmonization\nor correlates of protection. We provide examples and validate main ideas in the\ncontext of an interlab study that lays the foundation for using monoclonal\nantibodies as a reference for SARS-CoV-2 serology measurements.","PeriodicalId":501266,"journal":{"name":"arXiv - QuanBio - Quantitative Methods","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Uncertainty Quantification of Antibody Measurements: Physical Principles and Implications for Standardization\",\"authors\":\"Paul N. Patrone, Lili Wang, Sheng Lin-Gibson, Anthony J. Kearsley\",\"doi\":\"arxiv-2409.00191\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Harmonizing serology measurements is critical for identifying reference\\nmaterials that permit standardization and comparison of results across\\ndifferent diagnostic platforms. However, the theoretical foundations of such\\ntasks have yet to be fully explored in the context of antibody thermodynamics\\nand uncertainty quantification (UQ). This has restricted the usefulness of\\nstandards currently deployed and limited the scope of materials considered as\\nviable reference material. To address these problems, we develop rigorous\\ntheories of antibody normalization and harmonization, as well as formulate a\\nprobabilistic framework for defining correlates of protection. We begin by\\nproposing a mathematical definition of harmonization equipped with structure\\nneeded to quantify uncertainty associated with the choice of standard, assay,\\netc. We then show how a thermodynamic description of serology measurements (i)\\nrelates this structure to the Gibbs free-energy of antibody binding, and\\nthereby (ii) induces a regression analysis that directly harmonizes\\nmeasurements. We supplement this with a novel, optimization-based normalization\\n(not harmonization!) method that checks for consistency between reference and\\nsample dilution curves. Last, we relate these analyses to uncertainty\\npropagation techniques to estimate correlates of protection. A key result of\\nthese analyses is that under physically reasonable conditions, the choice of\\nreference material does not increase uncertainty associated with harmonization\\nor correlates of protection. We provide examples and validate main ideas in the\\ncontext of an interlab study that lays the foundation for using monoclonal\\nantibodies as a reference for SARS-CoV-2 serology measurements.\",\"PeriodicalId\":501266,\"journal\":{\"name\":\"arXiv - QuanBio - Quantitative Methods\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Quantitative Methods\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2409.00191\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Quantitative Methods","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.00191","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Uncertainty Quantification of Antibody Measurements: Physical Principles and Implications for Standardization
Harmonizing serology measurements is critical for identifying reference
materials that permit standardization and comparison of results across
different diagnostic platforms. However, the theoretical foundations of such
tasks have yet to be fully explored in the context of antibody thermodynamics
and uncertainty quantification (UQ). This has restricted the usefulness of
standards currently deployed and limited the scope of materials considered as
viable reference material. To address these problems, we develop rigorous
theories of antibody normalization and harmonization, as well as formulate a
probabilistic framework for defining correlates of protection. We begin by
proposing a mathematical definition of harmonization equipped with structure
needed to quantify uncertainty associated with the choice of standard, assay,
etc. We then show how a thermodynamic description of serology measurements (i)
relates this structure to the Gibbs free-energy of antibody binding, and
thereby (ii) induces a regression analysis that directly harmonizes
measurements. We supplement this with a novel, optimization-based normalization
(not harmonization!) method that checks for consistency between reference and
sample dilution curves. Last, we relate these analyses to uncertainty
propagation techniques to estimate correlates of protection. A key result of
these analyses is that under physically reasonable conditions, the choice of
reference material does not increase uncertainty associated with harmonization
or correlates of protection. We provide examples and validate main ideas in the
context of an interlab study that lays the foundation for using monoclonal
antibodies as a reference for SARS-CoV-2 serology measurements.