Iván M. Zerón, Jesús Algaba, José Manuel Míguez, Bruno Mendiboure, Felipe J. Blas
{"title":"用于准确确定水合物结构的旋转不变局部键序参数","authors":"Iván M. Zerón, Jesús Algaba, José Manuel Míguez, Bruno Mendiboure, Felipe J. Blas","doi":"arxiv-2409.00508","DOIUrl":null,"url":null,"abstract":"Averaged local bond order parameters based on spherical harmonics, also known\nas Lechner and Dellago order parameters, are routinely used to determine\ncrystal structures in molecular simulations. Among different options, the\ncombination of the $\\overline{q}_{4}$ and $\\overline{q}_{6}$ parameters is one\nof the best choices in the literature since allows one to distinguish, not only\nbetween solid- and liquid-like particles but also between different\ncrystallographic phases, including cubic and hexagonal phases. Recently, Algaba\net al. [J. Colloid Interface Sci. 623, 354, (2022)] have used the Lechner and\nDellago order parameters to distinguish hydrate- and liquid-like water\nmolecules in the context of determining the carbon dioxide hydrate-water\ninterfacial free energy. According to the results, the preferred combination\npreviously mentioned is not the best option to differentiate between hydrate-\nand liquid-like water molecules. In this work, we revisit and extend the use of\nthese parameters to deal with systems in which clathrate hydrates phases\ncoexist with liquid phases of water. We consider carbon dioxide, methane,\ntetrahydrofuran, nitrogen, and hydrogen hydrates that exhibit sI and sII\ncrystallographic structures. We find that the $\\overline{q}_{3}$ and\n$\\overline{q}_{12}$ combination is the best option possible between a large\nnumber of possible different pairs to distinguish between hydrate- and\nliquid-like water molecules in all cases.","PeriodicalId":501146,"journal":{"name":"arXiv - PHYS - Soft Condensed Matter","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Rotationally invariant local bond order parameters for accurate determination of hydrate structures\",\"authors\":\"Iván M. Zerón, Jesús Algaba, José Manuel Míguez, Bruno Mendiboure, Felipe J. Blas\",\"doi\":\"arxiv-2409.00508\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Averaged local bond order parameters based on spherical harmonics, also known\\nas Lechner and Dellago order parameters, are routinely used to determine\\ncrystal structures in molecular simulations. Among different options, the\\ncombination of the $\\\\overline{q}_{4}$ and $\\\\overline{q}_{6}$ parameters is one\\nof the best choices in the literature since allows one to distinguish, not only\\nbetween solid- and liquid-like particles but also between different\\ncrystallographic phases, including cubic and hexagonal phases. Recently, Algaba\\net al. [J. Colloid Interface Sci. 623, 354, (2022)] have used the Lechner and\\nDellago order parameters to distinguish hydrate- and liquid-like water\\nmolecules in the context of determining the carbon dioxide hydrate-water\\ninterfacial free energy. According to the results, the preferred combination\\npreviously mentioned is not the best option to differentiate between hydrate-\\nand liquid-like water molecules. In this work, we revisit and extend the use of\\nthese parameters to deal with systems in which clathrate hydrates phases\\ncoexist with liquid phases of water. We consider carbon dioxide, methane,\\ntetrahydrofuran, nitrogen, and hydrogen hydrates that exhibit sI and sII\\ncrystallographic structures. We find that the $\\\\overline{q}_{3}$ and\\n$\\\\overline{q}_{12}$ combination is the best option possible between a large\\nnumber of possible different pairs to distinguish between hydrate- and\\nliquid-like water molecules in all cases.\",\"PeriodicalId\":501146,\"journal\":{\"name\":\"arXiv - PHYS - Soft Condensed Matter\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Soft Condensed Matter\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2409.00508\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Soft Condensed Matter","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.00508","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Rotationally invariant local bond order parameters for accurate determination of hydrate structures
Averaged local bond order parameters based on spherical harmonics, also known
as Lechner and Dellago order parameters, are routinely used to determine
crystal structures in molecular simulations. Among different options, the
combination of the $\overline{q}_{4}$ and $\overline{q}_{6}$ parameters is one
of the best choices in the literature since allows one to distinguish, not only
between solid- and liquid-like particles but also between different
crystallographic phases, including cubic and hexagonal phases. Recently, Algaba
et al. [J. Colloid Interface Sci. 623, 354, (2022)] have used the Lechner and
Dellago order parameters to distinguish hydrate- and liquid-like water
molecules in the context of determining the carbon dioxide hydrate-water
interfacial free energy. According to the results, the preferred combination
previously mentioned is not the best option to differentiate between hydrate-
and liquid-like water molecules. In this work, we revisit and extend the use of
these parameters to deal with systems in which clathrate hydrates phases
coexist with liquid phases of water. We consider carbon dioxide, methane,
tetrahydrofuran, nitrogen, and hydrogen hydrates that exhibit sI and sII
crystallographic structures. We find that the $\overline{q}_{3}$ and
$\overline{q}_{12}$ combination is the best option possible between a large
number of possible different pairs to distinguish between hydrate- and
liquid-like water molecules in all cases.