LVI-PathNet:用于检测肺腺癌全切片图像中淋巴管侵犯的分割-分类管道

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引用次数: 0

摘要

肺癌中的淋巴管侵犯(LVI)是影响治疗和预后的重要预后因素,但由于观察者之间的差异,其可靠检测具有挑战性。本研究旨在开发一种利用全切片图像(WSI)进行淋巴管侵犯检测的深度学习模型,并评估其在病理学家信息系统中的有效性。经验丰富的病理学家对来自两个外部数据集和一个内部数据集的 162 张非粘液性肺腺癌 WSI 图像中的血管和入侵肿瘤细胞进行了标注。对两个模型进行了训练,以利用 LVI 特征分割血管和识别图像。DeepLabV3+ 模型在血管分割方面取得了 0.8840 的 "联合交叉"(Intersection-over-Union)和 0.9869 的接收者操作特征曲线下面积(AUC-ROC)。在 LVI 分类中,集合模型的 F1 分数为 0.9683,AUC-ROC 为 0.9987。该模型具有鲁棒性,不受染色和图像质量变化的影响。试点研究表明,病理学家检测 LVI 的评估时间平均减少了 16.95%,在 "疑难病例 "中减少了 21.5%。该模型有助于进行一致的诊断评估,表明它在检测血管病理变化和其他肺部病变方面具有更广泛的应用潜力。
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LVI-PathNet: Segmentation-classification pipeline for detection of lymphovascular invasion in whole slide images of lung adenocarcinoma

Lymphovascular invasion (LVI) in lung cancer is a significant prognostic factor that influences treatment and outcomes, yet its reliable detection is challenging due to interobserver variability. This study aims to develop a deep learning model for LVI detection using whole slide images (WSIs) and evaluate its effectiveness within a pathologist's information system. Experienced pathologists annotated blood vessels and invading tumor cells in 162 WSIs of non-mucinous lung adenocarcinoma sourced from two external and one internal datasets. Two models were trained to segment vessels and identify images with LVI features. DeepLabV3+ model achieved an Intersection-over-Union of 0.8840 and an area under the receiver operating characteristic curve (AUC-ROC) of 0.9869 in vessel segmentation. For LVI classification, the ensemble model achieved a F1-score of 0.9683 and an AUC-ROC of 0.9987. The model demonstrated robustness and was unaffected by variations in staining and image quality. The pilot study showed that pathologists' evaluation time for LVI detecting decreased by an average of 16.95%, and by 21.5% in “hard cases”. The model facilitated consistent diagnostic assessments, suggesting potential for broader applications in detecting pathological changes in blood vessels and other lung pathologies.

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来源期刊
Journal of Pathology Informatics
Journal of Pathology Informatics Medicine-Pathology and Forensic Medicine
CiteScore
3.70
自引率
0.00%
发文量
2
审稿时长
18 weeks
期刊介绍: The Journal of Pathology Informatics (JPI) is an open access peer-reviewed journal dedicated to the advancement of pathology informatics. This is the official journal of the Association for Pathology Informatics (API). The journal aims to publish broadly about pathology informatics and freely disseminate all articles worldwide. This journal is of interest to pathologists, informaticians, academics, researchers, health IT specialists, information officers, IT staff, vendors, and anyone with an interest in informatics. We encourage submissions from anyone with an interest in the field of pathology informatics. We publish all types of papers related to pathology informatics including original research articles, technical notes, reviews, viewpoints, commentaries, editorials, symposia, meeting abstracts, book reviews, and correspondence to the editors. All submissions are subject to rigorous peer review by the well-regarded editorial board and by expert referees in appropriate specialties.
期刊最新文献
Digital mapping of resected cancer specimens: The visual pathology report A precise machine learning model: Detecting cervical cancer using feature selection and explainable AI ViCE: An automated and quantitative program to assess intestinal tissue morphology Deep feature batch correction using ComBat for machine learning applications in computational pathology LVI-PathNet: Segmentation-classification pipeline for detection of lymphovascular invasion in whole slide images of lung adenocarcinoma
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