数据驱动的药物治疗:利用 SalpPSO 优化的 GraphSAGE 加强临床决策。

IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer Methods in Biomechanics and Biomedical Engineering Pub Date : 2024-09-18 DOI:10.1080/10255842.2024.2399012
Swathi Mirthika G L,Sivakumar B,S Hemalatha
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引用次数: 0

摘要

安全药物推荐系统在减少药物不良反应和提高患者安全方面发挥着至关重要的作用。在这项研究中,我们提出了一种创新方法,通过将基于粒子群优化的 Salp Swarm Optimization(SalpPSO)与 GraphSAGE 算法相结合来开发安全用药推荐系统。目标是优化 GraphSAGE 的超参数,从而实现更准确的药物相互作用预测和个性化药物推荐。研究首先从现实世界的数据集收集数据,包括 MIMIC-III、药物库和 ICD-9 本体论。这些数据库提供了与患者、疾病和药物相关的全面而多样的临床数据,构成了知识图谱的基础。它表示与药物相关的实体及其关系,如药物、适应症、不良反应和药物间相互作用。知识图谱整合了患者数据、疾病本体和药物信息,提高了系统预测药物间相互作用以及识别潜在药物不良反应的准确性。我们采用 GraphSAGE 算法作为学习知识图谱中节点嵌入的基础模型。为了提高其性能,我们提出了用于超参数优化的 SalpPSO 算法。SalpPSO 结合了 Salp Swarm Optimization 和 Particle Swarm Optimization 的特点,提供了一种稳健有效的优化过程。优化后的超参数可生成更可靠、更准确的药物推荐系统。为了进行评估,我们将数据集分为训练集和验证集,并将经过 SalpPSO 优化的超参数修改后的 GraphSAGE 模型的性能与标准模型进行比较。从各种指标进行的实验分析证明了所提出的安全推荐系统的效率,为医疗专家为患者做出更明智、更个性化的药物治疗决策提供了宝贵的依据。
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Data-driven drug treatment: enhancing clinical decision-making with SalpPSO-optimized GraphSAGE.
Safe drug recommendation systems play a crucial role in minimizing adverse drug reactions and enhancing patient safety. In this research, we propose an innovative approach to develop a safety drug recommendation system by integrating the Salp Swarm Optimization-based Particle Swarm Optimization (SalpPSO) with the GraphSAGE algorithm. The goal is to optimize the hyper parameters of GraphSAGE, enabling more accurate drug-drug interaction prediction and personalized drug recommendations. The research begins with data collection from real-world datasets, including MIMIC-III, Drug Bank, and ICD-9 ontology. The databases provide comprehensive and diverse clinical data related to patients, diseases, and drugs, forming the foundation of a knowledge graph. It represents drug-related entities and their relationships, such as drugs, indications, adverse effects, and drug-drug interactions. The knowledge graph's integration of patient data, disease ontology, and drug information enhances the system's accuracy to predict drug-drug interactions as well as identifying potential detrimental drug reactions. The GraphSAGE algorithm is employed as the base model for learning node embeddings in the knowledge graph. To enhance its performance, we propose the SalpPSO algorithm for hyper parameter optimization. SalpPSO combines features from Salp Swarm Optimization and Particle Swarm Optimization, offering a robust and effective optimization process. The optimized hyper parameters lead to more reliable and accurate drug recommendation system. For evaluation, the dataset is split into training and validation sets and compared the performance of the modified GraphSAGE model with SalpPSO-optimized hyper parameters to the standard models. The experimental analysis conducted in terms of various measures proves the efficiency of the proposed safe recommendation system, offering valuable for healthcare experts in making more informed and personalized drug treatment decisions for patients.
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来源期刊
CiteScore
4.10
自引率
6.20%
发文量
179
审稿时长
4-8 weeks
期刊介绍: The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.
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