Yoo Jin Lee , Jeong Hun Kim , Sang-Yeon Lee , Dong Hyun Jo
{"title":"对 203 名视网膜母细胞瘤患者进行基因型-表型综合研究","authors":"Yoo Jin Lee , Jeong Hun Kim , Sang-Yeon Lee , Dong Hyun Jo","doi":"10.1016/j.exer.2024.110102","DOIUrl":null,"url":null,"abstract":"<div><p>Retinoblastoma is the most common intraocular tumor in children and is caused by biallelic inactivation of the <em>RB1</em> gene. The identification of <em>RB1</em> germline variants in patients with retinoblastoma and their families is critical for early diagnosis and prevention. In this study, genetic testing was conducted on the genomic DNA of 203 patients with retinoblastoma using a combined approach of direct sequencing and multiplex ligation-dependent probe amplification (MLPA) assays for genotype-phenotype correlation studies. Sixty-five germline variants were identified in 80 of the 203 patients, with 67 bilateral and 13 unilateral retinoblastoma cases. The variant detection rates in the bilateral and unilateral cases were 88% and 10%, respectively. Eighteen novel variants were identified. Variants were classified according to their presence, mutation pattern, location, molecular consequences, and pathogenicity. Subsequently, the genotypes and phenotypes of the 203 patients were evaluated. Variants were associated with age at diagnosis (<em>p</em> < 0.001), laterality (<em>p</em> < 0.001), and tumor size (<em>p</em> = 0.010). The molecular consequences of the variants were related to laterality (<em>p</em> < 0.001) and tumor size (<em>p</em> = 0.001). The pathogenicity of the variants was associated with age at diagnosis (<em>p</em> = 0.001), laterality (<em>p</em> = 0.0212), treatment response (<em>p</em> = 0.0470), and tumor size (<em>p</em> = 0.002). These results suggest that patient phenotypes are associated with the inherent characteristics of germline <em>RB1</em> variants. These findings indicate the potential application of genetic testing results in clinical practice.</p></div>","PeriodicalId":12177,"journal":{"name":"Experimental eye research","volume":"248 ","pages":"Article 110102"},"PeriodicalIF":3.0000,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A comprehensive genotype-phenotype study in 203 individuals with retinoblastoma\",\"authors\":\"Yoo Jin Lee , Jeong Hun Kim , Sang-Yeon Lee , Dong Hyun Jo\",\"doi\":\"10.1016/j.exer.2024.110102\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Retinoblastoma is the most common intraocular tumor in children and is caused by biallelic inactivation of the <em>RB1</em> gene. The identification of <em>RB1</em> germline variants in patients with retinoblastoma and their families is critical for early diagnosis and prevention. In this study, genetic testing was conducted on the genomic DNA of 203 patients with retinoblastoma using a combined approach of direct sequencing and multiplex ligation-dependent probe amplification (MLPA) assays for genotype-phenotype correlation studies. Sixty-five germline variants were identified in 80 of the 203 patients, with 67 bilateral and 13 unilateral retinoblastoma cases. The variant detection rates in the bilateral and unilateral cases were 88% and 10%, respectively. Eighteen novel variants were identified. Variants were classified according to their presence, mutation pattern, location, molecular consequences, and pathogenicity. Subsequently, the genotypes and phenotypes of the 203 patients were evaluated. Variants were associated with age at diagnosis (<em>p</em> < 0.001), laterality (<em>p</em> < 0.001), and tumor size (<em>p</em> = 0.010). The molecular consequences of the variants were related to laterality (<em>p</em> < 0.001) and tumor size (<em>p</em> = 0.001). The pathogenicity of the variants was associated with age at diagnosis (<em>p</em> = 0.001), laterality (<em>p</em> = 0.0212), treatment response (<em>p</em> = 0.0470), and tumor size (<em>p</em> = 0.002). These results suggest that patient phenotypes are associated with the inherent characteristics of germline <em>RB1</em> variants. These findings indicate the potential application of genetic testing results in clinical practice.</p></div>\",\"PeriodicalId\":12177,\"journal\":{\"name\":\"Experimental eye research\",\"volume\":\"248 \",\"pages\":\"Article 110102\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2024-09-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Experimental eye research\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0014483524003245\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"OPHTHALMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Experimental eye research","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0014483524003245","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"OPHTHALMOLOGY","Score":null,"Total":0}
A comprehensive genotype-phenotype study in 203 individuals with retinoblastoma
Retinoblastoma is the most common intraocular tumor in children and is caused by biallelic inactivation of the RB1 gene. The identification of RB1 germline variants in patients with retinoblastoma and their families is critical for early diagnosis and prevention. In this study, genetic testing was conducted on the genomic DNA of 203 patients with retinoblastoma using a combined approach of direct sequencing and multiplex ligation-dependent probe amplification (MLPA) assays for genotype-phenotype correlation studies. Sixty-five germline variants were identified in 80 of the 203 patients, with 67 bilateral and 13 unilateral retinoblastoma cases. The variant detection rates in the bilateral and unilateral cases were 88% and 10%, respectively. Eighteen novel variants were identified. Variants were classified according to their presence, mutation pattern, location, molecular consequences, and pathogenicity. Subsequently, the genotypes and phenotypes of the 203 patients were evaluated. Variants were associated with age at diagnosis (p < 0.001), laterality (p < 0.001), and tumor size (p = 0.010). The molecular consequences of the variants were related to laterality (p < 0.001) and tumor size (p = 0.001). The pathogenicity of the variants was associated with age at diagnosis (p = 0.001), laterality (p = 0.0212), treatment response (p = 0.0470), and tumor size (p = 0.002). These results suggest that patient phenotypes are associated with the inherent characteristics of germline RB1 variants. These findings indicate the potential application of genetic testing results in clinical practice.
期刊介绍:
The primary goal of Experimental Eye Research is to publish original research papers on all aspects of experimental biology of the eye and ocular tissues that seek to define the mechanisms of normal function and/or disease. Studies of ocular tissues that encompass the disciplines of cell biology, developmental biology, genetics, molecular biology, physiology, biochemistry, biophysics, immunology or microbiology are most welcomed. Manuscripts that are purely clinical or in a surgical area of ophthalmology are not appropriate for submission to Experimental Eye Research and if received will be returned without review.