Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
{"title":"从海水中分离的 Polaribacter ponticola sp.","authors":"Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon","doi":"10.1099/ijsem.0.006526","DOIUrl":null,"url":null,"abstract":"<p><p>A Gram-stain-negative, yellow-pigmented, and strictly aerobic bacterium, designated as strain MSW5<sup>T</sup>, was isolated from seawater of the Yellow Sea in South Korea. The cells were non-motile rods exhibiting oxidase- and catalase-positive activities. Growth was observed at 15-25 °C (optimum, 25 °C) and pH 5.0-9.0 (optimum, pH 7.0-8.0) and in the presence of 1.0-5.0% (w/v) NaCl (optimum, 2.0%). Menaquinone-6 was the sole respiratory quinone, and iso-C<sub>15 : 0</sub>, summed feature 3 (C<sub>16 : 1</sub> <i> ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i> ω</i>6<i>c</i>), iso-C<sub>15 : 0</sub> 3-OH, and C<sub>15 : 1</sub> <i> ω</i>6<i>c</i> were the major cellular fatty acids. Major polar lipids included phosphatidylethanolamine, two unidentified aminolipids, and three unidentified lipids. Phylogenetic analyses based on 16S rRNA gene sequences and 92 concatenated core protein sequences revealed that strain MSW5<sup>T</sup> formed a distinct lineage within the genus <i>Polaribacter</i>. The genome of strain MSW5<sup>T</sup> was 3582 kb in size with a 29.1 mol% G+C content. Strain MSW5<sup>T</sup> exhibited the highest similarity to <i>Polaribacter atrinae</i> WP25<sup>T</sup>, with a 97.9% 16S rRNA gene sequence similarity. However, the average nucleotide identity and digital DNA-DNA hybridization values were 79.4 and 23.3%, respectively, indicating that strain MSW5<sup>T</sup> represents a novel species. Based on its phenotypic, chemotaxonomic, and phylogenetic characteristics, strain MSW5<sup>T</sup> is proposed to represent a novel species, with the name <i>Polaribacter ponticola</i> sp. nov. The type strain is MSW5<sup>T</sup> (=KACC 22340<sup>T</sup>=NBRC 116025<sup>T</sup>). In addition, whole genome sequence comparisons and phenotypic features suggested that <i>Polaribacter sejongensis</i> and <i>Polaribacter undariae</i> belong to the same species, with <i>P. undariae</i> proposed as a later heterotypic synonym of <i>P. sejongensis</i>. An emended description of <i>Polaribacter sejongensis</i> is also proposed.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11392042/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Polaribacter ponticola</i> sp. nov., isolated from seawater, reclassification of <i>Polaribacter undariae</i> as a later heterotypic synonym of <i>Polaribacter sejongensis</i>, and emended description of <i>Polaribacter sejongensis</i> Kim <i>et al</i>. 2013.\",\"authors\":\"Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon\",\"doi\":\"10.1099/ijsem.0.006526\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A Gram-stain-negative, yellow-pigmented, and strictly aerobic bacterium, designated as strain MSW5<sup>T</sup>, was isolated from seawater of the Yellow Sea in South Korea. The cells were non-motile rods exhibiting oxidase- and catalase-positive activities. Growth was observed at 15-25 °C (optimum, 25 °C) and pH 5.0-9.0 (optimum, pH 7.0-8.0) and in the presence of 1.0-5.0% (w/v) NaCl (optimum, 2.0%). Menaquinone-6 was the sole respiratory quinone, and iso-C<sub>15 : 0</sub>, summed feature 3 (C<sub>16 : 1</sub> <i> ω</i>7<i>c</i> and/or C<sub>16 : 1</sub> <i> ω</i>6<i>c</i>), iso-C<sub>15 : 0</sub> 3-OH, and C<sub>15 : 1</sub> <i> ω</i>6<i>c</i> were the major cellular fatty acids. Major polar lipids included phosphatidylethanolamine, two unidentified aminolipids, and three unidentified lipids. Phylogenetic analyses based on 16S rRNA gene sequences and 92 concatenated core protein sequences revealed that strain MSW5<sup>T</sup> formed a distinct lineage within the genus <i>Polaribacter</i>. The genome of strain MSW5<sup>T</sup> was 3582 kb in size with a 29.1 mol% G+C content. Strain MSW5<sup>T</sup> exhibited the highest similarity to <i>Polaribacter atrinae</i> WP25<sup>T</sup>, with a 97.9% 16S rRNA gene sequence similarity. However, the average nucleotide identity and digital DNA-DNA hybridization values were 79.4 and 23.3%, respectively, indicating that strain MSW5<sup>T</sup> represents a novel species. Based on its phenotypic, chemotaxonomic, and phylogenetic characteristics, strain MSW5<sup>T</sup> is proposed to represent a novel species, with the name <i>Polaribacter ponticola</i> sp. nov. The type strain is MSW5<sup>T</sup> (=KACC 22340<sup>T</sup>=NBRC 116025<sup>T</sup>). In addition, whole genome sequence comparisons and phenotypic features suggested that <i>Polaribacter sejongensis</i> and <i>Polaribacter undariae</i> belong to the same species, with <i>P. undariae</i> proposed as a later heterotypic synonym of <i>P. sejongensis</i>. An emended description of <i>Polaribacter sejongensis</i> is also proposed.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11392042/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006526\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006526","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013.
A Gram-stain-negative, yellow-pigmented, and strictly aerobic bacterium, designated as strain MSW5T, was isolated from seawater of the Yellow Sea in South Korea. The cells were non-motile rods exhibiting oxidase- and catalase-positive activities. Growth was observed at 15-25 °C (optimum, 25 °C) and pH 5.0-9.0 (optimum, pH 7.0-8.0) and in the presence of 1.0-5.0% (w/v) NaCl (optimum, 2.0%). Menaquinone-6 was the sole respiratory quinone, and iso-C15 : 0, summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c), iso-C15 : 0 3-OH, and C15 : 1 ω6c were the major cellular fatty acids. Major polar lipids included phosphatidylethanolamine, two unidentified aminolipids, and three unidentified lipids. Phylogenetic analyses based on 16S rRNA gene sequences and 92 concatenated core protein sequences revealed that strain MSW5T formed a distinct lineage within the genus Polaribacter. The genome of strain MSW5T was 3582 kb in size with a 29.1 mol% G+C content. Strain MSW5T exhibited the highest similarity to Polaribacter atrinae WP25T, with a 97.9% 16S rRNA gene sequence similarity. However, the average nucleotide identity and digital DNA-DNA hybridization values were 79.4 and 23.3%, respectively, indicating that strain MSW5T represents a novel species. Based on its phenotypic, chemotaxonomic, and phylogenetic characteristics, strain MSW5T is proposed to represent a novel species, with the name Polaribacter ponticola sp. nov. The type strain is MSW5T (=KACC 22340T=NBRC 116025T). In addition, whole genome sequence comparisons and phenotypic features suggested that Polaribacter sejongensis and Polaribacter undariae belong to the same species, with P. undariae proposed as a later heterotypic synonym of P. sejongensis. An emended description of Polaribacter sejongensis is also proposed.