从海水中分离的 Polaribacter ponticola sp.

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2024-09-01 DOI:10.1099/ijsem.0.006526
Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
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引用次数: 0

摘要

从韩国黄海的海水中分离出了一种革兰氏染色阴性、黄色着色、严格需氧的细菌,命名为 MSW5T 菌株。细胞为非运动棒状,具有氧化酶和过氧化氢酶阳性活性。该菌株在 15-25 °C(最适温度为 25 °C)、pH 值为 5.0-9.0 (最适 pH 值为 7.0-8.0)以及 1.0-5.0% (w/v) NaCl(最适 pH 值为 2.0%)的条件下生长。萘醌-6 是唯一的呼吸醌,异 C15 :0、总特征 3(C16 : 1 ω7c 和/或 C16 : 1 ω6c)、异 C15 :0 3-OH 和 C15 :1 ω6c 是主要的细胞脂肪酸。主要的极性脂类包括磷脂酰乙醇胺、两种未确定的氨基脂类和三种未确定的脂类。基于 16S rRNA 基因序列和 92 个核心蛋白序列的系统进化分析表明,菌株 MSW5T 在 Polaribacter 属中形成了一个独特的品系。菌株 MSW5T 的基因组大小为 3582 kb,G+C 含量为 29.1 mol%。菌株 MSW5T 与 Polaribacter atrinae WP25T 的相似度最高,16S rRNA 基因序列相似度达 97.9%。然而,平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 79.4% 和 23.3%,表明 MSW5T 菌株是一个新物种。根据其表型、化学分类学和系统发育特征,菌株 MSW5T 被认为是一个新物种,命名为 Polaribacter ponticola sp.模式菌株为 MSW5T(=KACC 22340T=NBRC 116025T)。此外,全基因组序列比较和表型特征表明,Polaribacter sejongensis 和 Polaribacter undariae 属于同一物种,P. undariae 被认为是 P. sejongensis 的异型异名。同时还提出了对 sejongensis Polaribacter 的修订描述。
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Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013.

A Gram-stain-negative, yellow-pigmented, and strictly aerobic bacterium, designated as strain MSW5T, was isolated from seawater of the Yellow Sea in South Korea. The cells were non-motile rods exhibiting oxidase- and catalase-positive activities. Growth was observed at 15-25 °C (optimum, 25 °C) and pH 5.0-9.0 (optimum, pH 7.0-8.0) and in the presence of 1.0-5.0% (w/v) NaCl (optimum, 2.0%). Menaquinone-6 was the sole respiratory quinone, and iso-C15 : 0, summed feature 3 (C16 : 1  ω7c and/or C16 : 1  ω6c), iso-C15 : 0 3-OH, and C15 : 1  ω6c were the major cellular fatty acids. Major polar lipids included phosphatidylethanolamine, two unidentified aminolipids, and three unidentified lipids. Phylogenetic analyses based on 16S rRNA gene sequences and 92 concatenated core protein sequences revealed that strain MSW5T formed a distinct lineage within the genus Polaribacter. The genome of strain MSW5T was 3582 kb in size with a 29.1 mol% G+C content. Strain MSW5T exhibited the highest similarity to Polaribacter atrinae WP25T, with a 97.9% 16S rRNA gene sequence similarity. However, the average nucleotide identity and digital DNA-DNA hybridization values were 79.4 and 23.3%, respectively, indicating that strain MSW5T represents a novel species. Based on its phenotypic, chemotaxonomic, and phylogenetic characteristics, strain MSW5T is proposed to represent a novel species, with the name Polaribacter ponticola sp. nov. The type strain is MSW5T (=KACC 22340T=NBRC 116025T). In addition, whole genome sequence comparisons and phenotypic features suggested that Polaribacter sejongensis and Polaribacter undariae belong to the same species, with P. undariae proposed as a later heterotypic synonym of P. sejongensis. An emended description of Polaribacter sejongensis is also proposed.

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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
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2.10%
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464
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