类风湿性关节炎发病机制中的 ITIH4:网络药理学和分子对接分析确定 CXCR4 为潜在受体。

IF 2.7 Q2 PATHOLOGY Pathophysiology Pub Date : 2024-09-20 DOI:10.3390/pathophysiology31030038
Lovely Joshi, Debolina Chakraborty, Vijay Kumar, Sagarika Biswas
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引用次数: 0

摘要

类风湿关节炎(RA)发病机制中的α-胰蛋白酶间抑制物重链4(ITIH4)水平升高已引起人们的关注,但其确切机制仍未探明。为了阐明这些机制,我们采用了网络药理学和分子对接的综合策略。RA 靶点来自 DisGeNET 数据库,而 ITIH4 的相互作用靶点则来自 STRING 和文献数据库。使用 Venny 2.1 来识别重叠基因,然后通过 Cytoscape 3.10.2 软件识别基因本体(GO)和京都基因组百科全书(KEGG),并在 ClusPro 服务器中进行分子对接。研究发现了18个与RA相关的ITIH4相互作用蛋白,通过富集分析证明了它们在趋化因子信号通路中的主要参与作用。ITIH4 与这 18 个蛋白的分子对接显示,C-X-C 趋化因子受体 4 型(CXCR4)是与趋化因子信号转导相关的主要蛋白,它与 ITIH4 的结合亲和力最高,能量为 -1705.7 kcal/mol,在 ITIH4 的活性位点口袋中与 His441、Arg288、Asp443 氨基酸形成 3 个氢键。通过在类风湿性关节炎成纤维细胞样滑膜细胞(RA-FLS)中进行基因敲除研究,分析了 ITIH4 对 CXCR4 的影响,结果表明在 RA-FLS 中通过 Western 印迹验证了 CXCR4 蛋白表达的显著下调。总之,推测CXCR4可能是ITIH4激活趋化因子信号转导的潜在受体,从而加剧了RA的发病机制。
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ITIH4 in Rheumatoid Arthritis Pathogenesis: Network Pharmacology and Molecular Docking Analysis Identify CXCR4 as a Potential Receptor.

Elevated levels of Inter-alpha-trypsin-inhibitor heavy chain 4 (ITIH4) have grabbed attention in rheumatoid arthritis (RA) pathogenesis, though its precise mechanisms remain unexplored. To elucidate these mechanisms, a comprehensive strategy employing network pharmacology and molecular docking was utilized. RA targets were sourced from the DisGeNET Database while interacting targets of ITIH4 were retrieved from the STRING and Literature databases. Venny 2.1 was used to identify overlapping genes, followed by Gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) through Cytoscape 3.10.2 software, and molecular docking was performed in the ClusPro server. The study identified 18 interacting proteins of ITIH4 associated with RA, demonstrating their major involvement in the chemokine signaling pathway by enrichment analysis. Molecular docking of ITIH4 with the 18 proteins revealed that C-X-C chemokine-receptor type 4 (CXCR4), a major protein associated with chemokine signaling, has the highest binding affinity with ITIH4 with energy -1705.7 kcal/mol forming 3 Hydrogen bonds in the active site pocket of ITIH4 with His441, Arg288, Asp443 amino acids. The effect of ITIH4 on CXCR4 was analyzed via knockdown studies in rheumatoid arthritis fibroblast-like synoviocytes (RA-FLS), demonstrating the significant downregulation of CXCR4 protein expression validated by Western blot in RA-FLS. In conclusion, it was speculated that CXCR4 might serve as a potential receptor for ITIH4 to activate the chemokine signaling, exacerbating RA pathogenesis.

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来源期刊
Pathophysiology
Pathophysiology Medicine-Pathology and Forensic Medicine
CiteScore
3.10
自引率
0.00%
发文量
48
期刊介绍: Pathophysiology is an international journal which publishes papers in English which address the etiology, development, and elimination of pathological processes. Contributions on the basic mechanisms underlying these processes, model systems and interdisciplinary approaches are strongly encouraged.
期刊最新文献
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