Paracraurococcus lichenis sp.

IF 2.3 3区 生物学 Q3 MICROBIOLOGY Archives of Microbiology Pub Date : 2024-09-24 DOI:10.1007/s00203-024-04129-7
Engkarat Kingkaew, Shingo Kato, Takao Iino, Takashi Itoh, Moriya Ohkuma, Wongsakorn Phongsopitanun, Somboon Tanasupawat
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摘要

我们采用多相分类法对从泰国玛哈沙拉堪府甘塔拉威猜县甘凉分区采集的地衣样本中分离出的一种新型细菌进行了深入研究,并将其命名为菌株 LOR1-02T。菌株 LOR1-02T 的生长温度范围为 20-42°C(最适温度为 30°C),pH 值范围为 5.0-7.5(最适 pH 值为 7.0),耐受 4.0% (w/v) NaCl。系统进化分析表明,该菌株与 Paracraurococcus ruber JCM 9931T 关系密切,16S rRNA 基因序列相似度为 97.16%,属于 Paracraurococcus 属。菌株 LOR1-02T 的基因组大小约为 8.6 Mb,G+C 含量为 70.9 mol%。此外,计算得出菌株 LOR1-02T 和类型菌株全基因组的 ANIb、ANIm 和 AAI 值分别为 82.6-83.4%、86.1-86.8% 和 81.4-82.2%,dDDH 值为 26.3-28.5%(C.I. 24.0-31.0%)。检测到的主要脂肪酸为 C18:1ω7c 和/或 C18:1ω6c、C16:0 和 C18:12OH。鉴定出的主要泛醌是 Q-10,极性脂质包括磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱、二磷脂酰甘油以及不明的磷胺脂、脂质和一种氨基脂质。根据全面的表型、化学分类学和基因型鉴定,认为菌株 LOR1-02T 代表 Paracraurococcus 属中的一个新物种,并将其命名为 Paracraurococcus lichenis sp.模式菌株命名为 LOR1-02T(= JCM 33121T = NBRC 112776T = TISTR 2503T)。
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Paracraurococcus lichenis sp. nov., isolated from lichen in Thailand

A novel bacterium, designated as strain LOR1-02T and isolated from a lichen sample collected from Kham Riang Subdistrict, Kantharawichai District, Maha Sarakham Province, Thailand, underwent thorough investigation utilizing a polyphasic taxonomic approach. Strain LOR1-02T demonstrated growth within a temperature range of 20–42 °C (optimal at 30 °C), pH range of 5.0–7.5 (optimal at pH 7.0), and tolerance to 4.0% (w/v) NaCl. Phylogenetic analysis revealed its close relation to Paracraurococcus ruber JCM 9931T, with a 16S rRNA gene sequence similarity of 97.16%, placing it within the genus Paracraurococcus. The approximate genome size of strain LOR1-02T was determined to be 8.6 Mb, with a G + C content of 70.9 mol%. Additionally, ANIb, ANIm, and AAI values between the whole genomes of strain LOR1-02T and type strains were calculated as 82.6–83.4%, 86.1–86.8%, and 81.4–82.2%, respectively, while the dDDH value was determined to be 26.3–28.5% (C.I. 24.0–31.0%). The predominant fatty acids detected were C18:1ω7c and/or C18:1ω6c, C16:0, and C18:12OH. The major ubiquinone identified was Q-10, and the polar lipids included phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, diphosphatidylglycerol, along with unidentified phosphoaminolipid, lipids, and an amino lipid. Based on comprehensive phenotypic, chemotaxonomic, and genotypic characterization, it is concluded that strain LOR1-02T represents a novel species within the genus Paracraurococcus, for which the name Paracraurococcus lichenis sp. nov. is proposed. The type strain designation is LOR1-02T (= JCM 33121T = NBRC 112776T = TISTR 2503T).

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来源期刊
Archives of Microbiology
Archives of Microbiology 生物-微生物学
CiteScore
4.90
自引率
3.60%
发文量
601
审稿时长
3 months
期刊介绍: Research papers must make a significant and original contribution to microbiology and be of interest to a broad readership. The results of any experimental approach that meets these objectives are welcome, particularly biochemical, molecular genetic, physiological, and/or physical investigations into microbial cells and their interactions with their environments, including their eukaryotic hosts. Mini-reviews in areas of special topical interest and papers on medical microbiology, ecology and systematics, including description of novel taxa, are also published. Theoretical papers and those that report on the analysis or ''mining'' of data are acceptable in principle if new information, interpretations, or hypotheses emerge.
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