对 200 名中国角膜病患者进行基于三体的全外显子组测序

IF 3 2区 医学 Q1 OPHTHALMOLOGY Experimental eye research Pub Date : 2024-09-24 DOI:10.1016/j.exer.2024.110109
Xingyong Li , Yinghao Yao , Shilai Xing , Yi-Han Zheng , Yang Zhou , Xiaoguang Yu , Jianzhong Su , Shihao Chen , Zi-Bing Jin
{"title":"对 200 名中国角膜病患者进行基于三体的全外显子组测序","authors":"Xingyong Li ,&nbsp;Yinghao Yao ,&nbsp;Shilai Xing ,&nbsp;Yi-Han Zheng ,&nbsp;Yang Zhou ,&nbsp;Xiaoguang Yu ,&nbsp;Jianzhong Su ,&nbsp;Shihao Chen ,&nbsp;Zi-Bing Jin","doi":"10.1016/j.exer.2024.110109","DOIUrl":null,"url":null,"abstract":"<div><div>Keratoconus (KC) is a complex corneal disorder with a well-recognized genetic component. In this study, we aimed to expand the genetic spectrum of 200 Chinese patients with keratoconus and their unaffected parents. Trio-based whole-exome sequencing was performed in 200 patients with sporadic keratoconus and their unaffected parents. The variants identified in candidate genes for keratoconus were analyzed using multiple bioinformatics tools. Finally, we identified 7 variants in 5 candidate genes for keratoconus in 5 patients. The c.T464C variant in the <em>IMPDH1</em> gene was defined as likely pathogenic according to the guidelines of the American College of Medical Genetics and Genomics, and the remaining variants in candidate genes (<em>TRANK1</em>, <em>SLC4A11</em>, <em>CERKL</em>, <em>IFT172</em>) were defined as uncertain significance. Our results expand the genetic spectrum in KC, highlight the genetic heterogeneity of this disease and provide important clues for future functional validation.</div></div>","PeriodicalId":12177,"journal":{"name":"Experimental eye research","volume":"248 ","pages":"Article 110109"},"PeriodicalIF":3.0000,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Trio-based whole-exome sequencing of 200 Chinese patients with keratoconus\",\"authors\":\"Xingyong Li ,&nbsp;Yinghao Yao ,&nbsp;Shilai Xing ,&nbsp;Yi-Han Zheng ,&nbsp;Yang Zhou ,&nbsp;Xiaoguang Yu ,&nbsp;Jianzhong Su ,&nbsp;Shihao Chen ,&nbsp;Zi-Bing Jin\",\"doi\":\"10.1016/j.exer.2024.110109\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Keratoconus (KC) is a complex corneal disorder with a well-recognized genetic component. In this study, we aimed to expand the genetic spectrum of 200 Chinese patients with keratoconus and their unaffected parents. Trio-based whole-exome sequencing was performed in 200 patients with sporadic keratoconus and their unaffected parents. The variants identified in candidate genes for keratoconus were analyzed using multiple bioinformatics tools. Finally, we identified 7 variants in 5 candidate genes for keratoconus in 5 patients. The c.T464C variant in the <em>IMPDH1</em> gene was defined as likely pathogenic according to the guidelines of the American College of Medical Genetics and Genomics, and the remaining variants in candidate genes (<em>TRANK1</em>, <em>SLC4A11</em>, <em>CERKL</em>, <em>IFT172</em>) were defined as uncertain significance. Our results expand the genetic spectrum in KC, highlight the genetic heterogeneity of this disease and provide important clues for future functional validation.</div></div>\",\"PeriodicalId\":12177,\"journal\":{\"name\":\"Experimental eye research\",\"volume\":\"248 \",\"pages\":\"Article 110109\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2024-09-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Experimental eye research\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0014483524003312\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"OPHTHALMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Experimental eye research","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0014483524003312","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"OPHTHALMOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

角膜塑形镜(KC)是一种复杂的角膜疾病,具有公认的遗传因素。在这项研究中,我们旨在扩大 200 名中国角膜炎患者及其未受影响的父母的遗传谱。我们对 200 名散发性角膜炎患者及其未受影响的父母进行了基于三重全外显子组测序。我们使用多种生物信息学工具分析了在角膜病候选基因中发现的变异。最后,我们在 5 名患者的 5 个角膜病候选基因中发现了 7 个变异。根据美国医学遗传学和基因组学学院(American College of Medical Genetics and Genomics)的指南,IMPDH1 基因中的 c.T464C 变异被定义为可能致病,其余候选基因(TRANK1、SLC4A11、CERKL、IFT172)中的变异被定义为意义不确定。我们的研究结果扩大了 KC 的基因谱,凸显了该疾病的遗传异质性,并为未来的功能验证提供了重要线索。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Trio-based whole-exome sequencing of 200 Chinese patients with keratoconus
Keratoconus (KC) is a complex corneal disorder with a well-recognized genetic component. In this study, we aimed to expand the genetic spectrum of 200 Chinese patients with keratoconus and their unaffected parents. Trio-based whole-exome sequencing was performed in 200 patients with sporadic keratoconus and their unaffected parents. The variants identified in candidate genes for keratoconus were analyzed using multiple bioinformatics tools. Finally, we identified 7 variants in 5 candidate genes for keratoconus in 5 patients. The c.T464C variant in the IMPDH1 gene was defined as likely pathogenic according to the guidelines of the American College of Medical Genetics and Genomics, and the remaining variants in candidate genes (TRANK1, SLC4A11, CERKL, IFT172) were defined as uncertain significance. Our results expand the genetic spectrum in KC, highlight the genetic heterogeneity of this disease and provide important clues for future functional validation.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Experimental eye research
Experimental eye research 医学-眼科学
CiteScore
6.80
自引率
5.90%
发文量
323
审稿时长
66 days
期刊介绍: The primary goal of Experimental Eye Research is to publish original research papers on all aspects of experimental biology of the eye and ocular tissues that seek to define the mechanisms of normal function and/or disease. Studies of ocular tissues that encompass the disciplines of cell biology, developmental biology, genetics, molecular biology, physiology, biochemistry, biophysics, immunology or microbiology are most welcomed. Manuscripts that are purely clinical or in a surgical area of ophthalmology are not appropriate for submission to Experimental Eye Research and if received will be returned without review.
期刊最新文献
Role of semaphorin7A in epithelial-mesenchymal transition and proliferative vitreoretinopathy. Complement C3 knockout protects photoreceptors in the sodium iodate model. Assessment of Protein Profile ın Vitreous Samples of Patients with Epiretinal Membrane by Proteomic Approaches. Monochromatic light effects on refractive error, cone cell density and retinoic acid signaling in dorsal and ventral retina in guinea pigs Deferiprone protects photoreceptors by inhibiting ferroptosis after experimental retinal detachment.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1