{"title":"基于代谢编码分析的典型海水养殖海湾 Ostreococcus(叶绿藻门)的分子多样性和季节动态变化","authors":"Feng Liu , Jiamin Li , Shuangle Jin , Liang Liu","doi":"10.1016/j.marenvres.2024.106764","DOIUrl":null,"url":null,"abstract":"<div><div><em>Ostreococcus</em> (Mamiellophyceae, Chlorophyta) is a cosmopolitan genus of marine pico-phytoplankton and the smallest free-living photosynthetic eukaryotes with cell size of 1–2 μm. To understand the diversity and spatio-temporal distribution of <em>Ostreococcus</em> in the Rongcheng coastal regions in northern China, metabarcoding analysis based on the 18S rDNA V4 molecular marker was applied to study the molecular diversity and seasonal dynamics of <em>Ostreococcus</em> in three typical mariculture bays (Rongcheng Bay, Lidao Bay and Sanggou Bay). A total of 103 amplicon sequence variants (ASVs) annotated as <em>Ostreococcus</em> were detected in these three typical mariculture bays throughout the year. The top five ASVs in terms of abundance were ASV4, ASV9, ASV14, ASV28 and ASV109, totally occupying 99.1% of <em>Ostreococcus</em> reads. Phylogenetic analysis showed that these five dominant ASVs represented two <em>Ostreococcus</em> ecotypes (OI and OII) and were grouped into four <em>Ostreococcus</em> clades including <em>Ostreococcus lucimarinus</em> (ASV9) and <em>Ostreococcus tauri</em> (ASV28 and ASV109) in OI, and <em>Ostreococcus</em> sp. RC1 (ASV4) and <em>Ostreococcus</em> sp. RC2 (ASV14) in <span>OII</span>, which provided direct evidence to support the co-existence of two ecotypes in the Rongcheng coastal regions. Five dominant ASVs in OI and OII exhibited two distinct seasonal distribution patterns. Three dominant ASVs (ASV9, ASV28 and ASV109) in OI could be detected in all four seasons of the year, exhibiting native distribution properties, while two ASVs (ASV4 and ASV14) in OII decreased sharply in winter and could not be detected in spring, exhibiting characteristics of alien inputs. The composition, succession and association of <em>Ostreococcus</em> community were mainly driven by water temperature in these mariculture bays. This study helps us systematically understand the molecular diversity and distribution patterns of <em>Ostreococcus</em> in typical mariculture bays in northern China, laying the foundation for understanding and revealing the ecological functions of pico-phytoplankton.</div></div>","PeriodicalId":18204,"journal":{"name":"Marine environmental research","volume":"202 ","pages":"Article 106764"},"PeriodicalIF":3.0000,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Molecular diversity and seasonal dynamics of Ostreococcus (Mamiellophyceae, Chlorophyta) in typical mariculture bays based on metabarcoding analysis\",\"authors\":\"Feng Liu , Jiamin Li , Shuangle Jin , Liang Liu\",\"doi\":\"10.1016/j.marenvres.2024.106764\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div><em>Ostreococcus</em> (Mamiellophyceae, Chlorophyta) is a cosmopolitan genus of marine pico-phytoplankton and the smallest free-living photosynthetic eukaryotes with cell size of 1–2 μm. To understand the diversity and spatio-temporal distribution of <em>Ostreococcus</em> in the Rongcheng coastal regions in northern China, metabarcoding analysis based on the 18S rDNA V4 molecular marker was applied to study the molecular diversity and seasonal dynamics of <em>Ostreococcus</em> in three typical mariculture bays (Rongcheng Bay, Lidao Bay and Sanggou Bay). A total of 103 amplicon sequence variants (ASVs) annotated as <em>Ostreococcus</em> were detected in these three typical mariculture bays throughout the year. The top five ASVs in terms of abundance were ASV4, ASV9, ASV14, ASV28 and ASV109, totally occupying 99.1% of <em>Ostreococcus</em> reads. Phylogenetic analysis showed that these five dominant ASVs represented two <em>Ostreococcus</em> ecotypes (OI and OII) and were grouped into four <em>Ostreococcus</em> clades including <em>Ostreococcus lucimarinus</em> (ASV9) and <em>Ostreococcus tauri</em> (ASV28 and ASV109) in OI, and <em>Ostreococcus</em> sp. RC1 (ASV4) and <em>Ostreococcus</em> sp. RC2 (ASV14) in <span>OII</span>, which provided direct evidence to support the co-existence of two ecotypes in the Rongcheng coastal regions. Five dominant ASVs in OI and OII exhibited two distinct seasonal distribution patterns. Three dominant ASVs (ASV9, ASV28 and ASV109) in OI could be detected in all four seasons of the year, exhibiting native distribution properties, while two ASVs (ASV4 and ASV14) in OII decreased sharply in winter and could not be detected in spring, exhibiting characteristics of alien inputs. The composition, succession and association of <em>Ostreococcus</em> community were mainly driven by water temperature in these mariculture bays. This study helps us systematically understand the molecular diversity and distribution patterns of <em>Ostreococcus</em> in typical mariculture bays in northern China, laying the foundation for understanding and revealing the ecological functions of pico-phytoplankton.</div></div>\",\"PeriodicalId\":18204,\"journal\":{\"name\":\"Marine environmental research\",\"volume\":\"202 \",\"pages\":\"Article 106764\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2024-09-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Marine environmental research\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0141113624004252\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine environmental research","FirstCategoryId":"93","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0141113624004252","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
引用次数: 0
摘要
海洋球藻(Mamiellophyceae, Chlorophyta)是一种世界性的海洋微浮游植物属,也是最小的自由生活光合真核生物,细胞大小为1-2微米。为了解中国北方荣成沿海地区赤潮球藻的多样性和时空分布,应用基于 18S rDNA V4 分子标记的代谢编码分析方法,研究了三个典型海湾(荣成湾、里岛湾和桑沟湾)赤潮球藻的分子多样性和季节动态。在这三个典型海湾中,全年共检测到 103 个注释为 Ostreococcus 的扩增子序列变体(ASV)。丰度最高的五个 ASV 分别为 ASV4、ASV9、ASV14、ASV28 和 ASV109,共占 Ostreococcus 读数的 99.1%。系统发育分析表明,这五个优势 ASV 代表了两个 Ostreococcus 生态型(OI 和 OII),并被归入四个 Ostreococcus 支系,包括 OI 支系中的 Ostreococcus lucimarinus(ASV9)和 Ostreococcus tauri(ASV28 和 ASV109),以及 OI 支系中的 Ostreococcus sp.RC1(ASV4)和 RC2(ASV14),为荣成沿海地区两种生态型共存提供了直接证据。OI 和 OII 中的 5 种优势 ASV 表现出两种不同的季节分布模式。OI中的3个优势ASV(ASV9、ASV28和ASV109)在一年四季中均可检测到,表现出原生分布特征;而OII中的2个ASV(ASV4和ASV14)在冬季急剧减少,春季无法检测到,表现出外来输入特征。这些海水养殖海湾中尾孢球藻群落的组成、演替和关联主要受水温的影响。本研究有助于我们系统地了解中国北方典型海水养殖海湾中尾孢藻的分子多样性和分布模式,为认识和揭示微小浮游植物的生态功能奠定基础。
Molecular diversity and seasonal dynamics of Ostreococcus (Mamiellophyceae, Chlorophyta) in typical mariculture bays based on metabarcoding analysis
Ostreococcus (Mamiellophyceae, Chlorophyta) is a cosmopolitan genus of marine pico-phytoplankton and the smallest free-living photosynthetic eukaryotes with cell size of 1–2 μm. To understand the diversity and spatio-temporal distribution of Ostreococcus in the Rongcheng coastal regions in northern China, metabarcoding analysis based on the 18S rDNA V4 molecular marker was applied to study the molecular diversity and seasonal dynamics of Ostreococcus in three typical mariculture bays (Rongcheng Bay, Lidao Bay and Sanggou Bay). A total of 103 amplicon sequence variants (ASVs) annotated as Ostreococcus were detected in these three typical mariculture bays throughout the year. The top five ASVs in terms of abundance were ASV4, ASV9, ASV14, ASV28 and ASV109, totally occupying 99.1% of Ostreococcus reads. Phylogenetic analysis showed that these five dominant ASVs represented two Ostreococcus ecotypes (OI and OII) and were grouped into four Ostreococcus clades including Ostreococcus lucimarinus (ASV9) and Ostreococcus tauri (ASV28 and ASV109) in OI, and Ostreococcus sp. RC1 (ASV4) and Ostreococcus sp. RC2 (ASV14) in OII, which provided direct evidence to support the co-existence of two ecotypes in the Rongcheng coastal regions. Five dominant ASVs in OI and OII exhibited two distinct seasonal distribution patterns. Three dominant ASVs (ASV9, ASV28 and ASV109) in OI could be detected in all four seasons of the year, exhibiting native distribution properties, while two ASVs (ASV4 and ASV14) in OII decreased sharply in winter and could not be detected in spring, exhibiting characteristics of alien inputs. The composition, succession and association of Ostreococcus community were mainly driven by water temperature in these mariculture bays. This study helps us systematically understand the molecular diversity and distribution patterns of Ostreococcus in typical mariculture bays in northern China, laying the foundation for understanding and revealing the ecological functions of pico-phytoplankton.
期刊介绍:
Marine Environmental Research publishes original research papers on chemical, physical, and biological interactions in the oceans and coastal waters. The journal serves as a forum for new information on biology, chemistry, and toxicology and syntheses that advance understanding of marine environmental processes.
Submission of multidisciplinary studies is encouraged. Studies that utilize experimental approaches to clarify the roles of anthropogenic and natural causes of changes in marine ecosystems are especially welcome, as are those studies that represent new developments of a theoretical or conceptual aspect of marine science. All papers published in this journal are reviewed by qualified peers prior to acceptance and publication. Examples of topics considered to be appropriate for the journal include, but are not limited to, the following:
– The extent, persistence, and consequences of change and the recovery from such change in natural marine systems
– The biochemical, physiological, and ecological consequences of contaminants to marine organisms and ecosystems
– The biogeochemistry of naturally occurring and anthropogenic substances
– Models that describe and predict the above processes
– Monitoring studies, to the extent that their results provide new information on functional processes
– Methodological papers describing improved quantitative techniques for the marine sciences.