动物运动模拟的统计构件。

IF 3.4 1区 生物学 Q2 ECOLOGY Movement Ecology Pub Date : 2024-09-30 DOI:10.1186/s40462-024-00507-4
Wayne M Getz, Richard Salter, Varun Sethi, Shlomo Cain, Orr Spiegel, Sivan Toledo
{"title":"动物运动模拟的统计构件。","authors":"Wayne M Getz, Richard Salter, Varun Sethi, Shlomo Cain, Orr Spiegel, Sivan Toledo","doi":"10.1186/s40462-024-00507-4","DOIUrl":null,"url":null,"abstract":"<p><p>Animal movement plays a key role in many ecological processes and has a direct influence on an individual's fitness at several scales of analysis (i.e., next-step, subdiel, day-by-day, seasonal). This highlights the need to dissect movement behavior at different spatio-temporal scales and develop hierarchical movement tools for generating realistic tracks to supplement existing single-temporal-scale simulators. In reality, animal movement paths are a concatenation of fundamental movement elements (FuMEs: e.g., a step or wing flap), but these are not generally extractable from a relocation time-series track (e.g., sequential GPS fixes) from which step-length (SL, aka velocity) and turning-angle (TA) time series can be extracted. For short, fixed-length segments of track, we generate their SL and TA statistics (e.g., means, standard deviations, correlations) to obtain segment-specific vectors that can be cluster into different types. We use the centroids of these clusters to obtain a set of statistical movement elements (StaMEs; e.g.,directed fast movement versus random slow movement elements) that we use as a basis for analyzing and simulating movement tracks. Our novel concept is that sequences of StaMEs provide a basis for constructing and fitting step-selection kernels at the scale of fixed-length canonical activity modes: short fixed-length sequences of interpretable activity such as dithering, ambling, directed walking, or running. Beyond this, variable length pure or characteristic mixtures of CAMs can be interpreted as behavioral activity modes (BAMs), such as gathering resources (a sequence of dithering and walking StaMEs) or beelining (a sequence of fast directed-walk StaMEs interspersed with vigilance and navigation stops). Here we formulate a multi-modal, step-selection kernel simulation framework, and construct a 2-mode movement simulator (Numerus ANIMOVER_1), using Numerus RAMP technology. These RAMPs run as stand alone applications: they require no coding but only the input of selected parameter values. They can also be used in R programming environments as virtual R packages. We illustrate our methods for extracting StaMEs from both ANIMOVER_1 simulated data and empirical data from two barn owls (Tyto alba) in the Harod Valley, Israel. Overall, our new bottom-up approach to path segmentation allows us to both dissect real movement tracks and generate realistic synthetic ones, thereby providing a general tool for testing hypothesis in movement ecology and simulating animal movement in diverse contexts such as evaluating an individual's response to landscape changes, release of an individual into a novel environment, or identifying when individuals are sick or unusually stressed.</p>","PeriodicalId":54288,"journal":{"name":"Movement Ecology","volume":"12 1","pages":"67"},"PeriodicalIF":3.4000,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11440923/pdf/","citationCount":"0","resultStr":"{\"title\":\"The statistical building blocks of animal movement simulations.\",\"authors\":\"Wayne M Getz, Richard Salter, Varun Sethi, Shlomo Cain, Orr Spiegel, Sivan Toledo\",\"doi\":\"10.1186/s40462-024-00507-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Animal movement plays a key role in many ecological processes and has a direct influence on an individual's fitness at several scales of analysis (i.e., next-step, subdiel, day-by-day, seasonal). This highlights the need to dissect movement behavior at different spatio-temporal scales and develop hierarchical movement tools for generating realistic tracks to supplement existing single-temporal-scale simulators. In reality, animal movement paths are a concatenation of fundamental movement elements (FuMEs: e.g., a step or wing flap), but these are not generally extractable from a relocation time-series track (e.g., sequential GPS fixes) from which step-length (SL, aka velocity) and turning-angle (TA) time series can be extracted. For short, fixed-length segments of track, we generate their SL and TA statistics (e.g., means, standard deviations, correlations) to obtain segment-specific vectors that can be cluster into different types. We use the centroids of these clusters to obtain a set of statistical movement elements (StaMEs; e.g.,directed fast movement versus random slow movement elements) that we use as a basis for analyzing and simulating movement tracks. Our novel concept is that sequences of StaMEs provide a basis for constructing and fitting step-selection kernels at the scale of fixed-length canonical activity modes: short fixed-length sequences of interpretable activity such as dithering, ambling, directed walking, or running. Beyond this, variable length pure or characteristic mixtures of CAMs can be interpreted as behavioral activity modes (BAMs), such as gathering resources (a sequence of dithering and walking StaMEs) or beelining (a sequence of fast directed-walk StaMEs interspersed with vigilance and navigation stops). Here we formulate a multi-modal, step-selection kernel simulation framework, and construct a 2-mode movement simulator (Numerus ANIMOVER_1), using Numerus RAMP technology. These RAMPs run as stand alone applications: they require no coding but only the input of selected parameter values. They can also be used in R programming environments as virtual R packages. We illustrate our methods for extracting StaMEs from both ANIMOVER_1 simulated data and empirical data from two barn owls (Tyto alba) in the Harod Valley, Israel. Overall, our new bottom-up approach to path segmentation allows us to both dissect real movement tracks and generate realistic synthetic ones, thereby providing a general tool for testing hypothesis in movement ecology and simulating animal movement in diverse contexts such as evaluating an individual's response to landscape changes, release of an individual into a novel environment, or identifying when individuals are sick or unusually stressed.</p>\",\"PeriodicalId\":54288,\"journal\":{\"name\":\"Movement Ecology\",\"volume\":\"12 1\",\"pages\":\"67\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2024-09-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11440923/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Movement Ecology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1186/s40462-024-00507-4\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Movement Ecology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s40462-024-00507-4","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

动物运动在许多生态过程中起着关键作用,并在多个分析尺度(即下一步、子尺度、逐日尺度、季节尺度)上对个体的适应性产生直接影响。这就凸显了在不同时空尺度上剖析运动行为和开发分层运动工具以生成逼真轨迹的必要性,从而对现有的单时空尺度模拟器进行补充。在现实中,动物的运动轨迹是基本运动要素(FuMEs:如步幅或翅膀扇动)的组合,但这些要素一般无法从重新定位的时间序列轨迹(如连续的 GPS 定位)中提取出来,而步幅(SL,又称速度)和转弯角度(TA)时间序列可以从中提取出来。对于固定长度的短轨迹段,我们会生成它们的步长和转角统计量(如平均值、标准偏差、相关性),以获得特定的轨迹段向量,并将其聚类为不同的类型。我们利用这些聚类的中心点获得一组统计运动元素(StaMEs;例如,定向快速运动元素与随机慢速运动元素),并以此为基础分析和模拟运动轨迹。我们的新概念是,StaMEs 序列为构建和拟合固定长度典型活动模式尺度上的阶跃选择核提供了基础:固定长度的可解释活动短序列,如抖动、埋伏、定向行走或奔跑。除此以外,可变长度的纯活动模式或有特征的混合活动模式可被解释为行为活动模式(BAM),如收集资源(一连串的抖动和行走 StaME)或溯溪(一连串的快速定向行走 StaME,中间穿插警惕和导航停止)。在此,我们制定了一个多模式、步长选择内核模拟框架,并利用 Numerus RAMP 技术构建了一个双模式运动模拟器(Numerus ANIMOVER_1)。这些 RAMP 可作为独立应用程序运行:无需编码,只需输入选定的参数值。它们也可以作为虚拟 R 包在 R 编程环境中使用。我们展示了从 ANIMOVER_1 模拟数据和以色列哈罗德山谷两只仓鸮(Tyto alba)的经验数据中提取 StaMEs 的方法。总之,我们新的自下而上的路径分割方法使我们既能剖析真实的运动轨迹,又能生成逼真的合成轨迹,从而为运动生态学中的假设检验提供了一种通用工具,并能在各种情况下模拟动物运动,例如评估个体对景观变化的反应、将个体释放到新环境中、或识别个体何时生病或异常紧张。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
The statistical building blocks of animal movement simulations.

Animal movement plays a key role in many ecological processes and has a direct influence on an individual's fitness at several scales of analysis (i.e., next-step, subdiel, day-by-day, seasonal). This highlights the need to dissect movement behavior at different spatio-temporal scales and develop hierarchical movement tools for generating realistic tracks to supplement existing single-temporal-scale simulators. In reality, animal movement paths are a concatenation of fundamental movement elements (FuMEs: e.g., a step or wing flap), but these are not generally extractable from a relocation time-series track (e.g., sequential GPS fixes) from which step-length (SL, aka velocity) and turning-angle (TA) time series can be extracted. For short, fixed-length segments of track, we generate their SL and TA statistics (e.g., means, standard deviations, correlations) to obtain segment-specific vectors that can be cluster into different types. We use the centroids of these clusters to obtain a set of statistical movement elements (StaMEs; e.g.,directed fast movement versus random slow movement elements) that we use as a basis for analyzing and simulating movement tracks. Our novel concept is that sequences of StaMEs provide a basis for constructing and fitting step-selection kernels at the scale of fixed-length canonical activity modes: short fixed-length sequences of interpretable activity such as dithering, ambling, directed walking, or running. Beyond this, variable length pure or characteristic mixtures of CAMs can be interpreted as behavioral activity modes (BAMs), such as gathering resources (a sequence of dithering and walking StaMEs) or beelining (a sequence of fast directed-walk StaMEs interspersed with vigilance and navigation stops). Here we formulate a multi-modal, step-selection kernel simulation framework, and construct a 2-mode movement simulator (Numerus ANIMOVER_1), using Numerus RAMP technology. These RAMPs run as stand alone applications: they require no coding but only the input of selected parameter values. They can also be used in R programming environments as virtual R packages. We illustrate our methods for extracting StaMEs from both ANIMOVER_1 simulated data and empirical data from two barn owls (Tyto alba) in the Harod Valley, Israel. Overall, our new bottom-up approach to path segmentation allows us to both dissect real movement tracks and generate realistic synthetic ones, thereby providing a general tool for testing hypothesis in movement ecology and simulating animal movement in diverse contexts such as evaluating an individual's response to landscape changes, release of an individual into a novel environment, or identifying when individuals are sick or unusually stressed.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Movement Ecology
Movement Ecology Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
6.60
自引率
4.90%
发文量
47
审稿时长
23 weeks
期刊介绍: Movement Ecology is an open-access interdisciplinary journal publishing novel insights from empirical and theoretical approaches into the ecology of movement of the whole organism - either animals, plants or microorganisms - as the central theme. We welcome manuscripts on any taxa and any movement phenomena (e.g. foraging, dispersal and seasonal migration) addressing important research questions on the patterns, mechanisms, causes and consequences of organismal movement. Manuscripts will be rigorously peer-reviewed to ensure novelty and high quality.
期刊最新文献
Satellite telemetry reveals complex mixed movement strategies in ibis and spoonbills of Australia: implications for water and wetland management. The timing and spatial distribution of mother-offspring interactions in an obligate hider. Identifying signals of memory from observations of animal movements. Time synchronisation for millisecond-precision on bio-loggers. Migratory strategies across an ecological barrier: is the answer blowing in the wind?
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1