乙酸乙酯水溶液和乙醇溶液中的分子间相互作用:拉曼、DFT、MEP、FMO、AIM、NCI-RDG、ELF 和 LOL 分析。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-09-25 DOI:10.1007/s00894-024-06147-0
Abduvakhid Jumabaev, Stève-Jonathan Koyambo-Konzapa, Hakim Hushvaktov, Ahmad Absanov, Bekzod Khudaykulov, Utkirjon Holikulov, Zokhid Ernazarov, Noureddine Issaoui, Omar M. Al-Dossary, Mama Nsangou
{"title":"乙酸乙酯水溶液和乙醇溶液中的分子间相互作用:拉曼、DFT、MEP、FMO、AIM、NCI-RDG、ELF 和 LOL 分析。","authors":"Abduvakhid Jumabaev,&nbsp;Stève-Jonathan Koyambo-Konzapa,&nbsp;Hakim Hushvaktov,&nbsp;Ahmad Absanov,&nbsp;Bekzod Khudaykulov,&nbsp;Utkirjon Holikulov,&nbsp;Zokhid Ernazarov,&nbsp;Noureddine Issaoui,&nbsp;Omar M. Al-Dossary,&nbsp;Mama Nsangou","doi":"10.1007/s00894-024-06147-0","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>The intermolecular interactions of ethyl acetate (EtOAc)-water (H<sub>2</sub>O)/ethanol (EtOH) mixtures were investigated using a combination of Raman spectroscopy and quantum chemical calculations. The computational approach was used to analyze the structure of hydrogen-bonded complexes of ethyl acetate with water/ethanol molecules, based on density functional theory (DFT). The calculated frequencies closely matched the experimental Raman values, with differences being under 4%. Experimental data show that when the concentrations of ethyl acetate in the ethyl acetate/water/ethanol solutions were reduced, almost all Raman spectral bands are blue-shifted. The AIM analysis reveals that all the given complexes possess a positive energy density, indicating that the molecules interact electrostatically. The energy and bond length indicate that the methyl group forms relatively weak hydrogen bonds. Analysis indicates that EtOAc forms weak H-bonding C = O∙∙∙H and C-H∙∙∙O, which are recognized as van der Waals interactions. As the amount of ethyl acetate decreases in the complex, the interaction forces also decrease. This could also explain why the bands are blue-shifted. It was discovered that the title complexes’ hydrogen bond energy decreased exponentially as bond length increased.</p><h3>Methods</h3><p>The geometries of the molecular complexes were optimized using the Gaussian 09W program and the B3LYP/6–311 +  + G(d,p) set of functions. The potential energy distribution (PED) analysis was performed using VEDA 4.0 software. Raman spectra were drawn using the Origin 8.5 software. The Multiwfn 3.8 software was used to calculate topological parameters of electron density in molecular systems. GaussView 6.0 and Visual Molecular Dynamics (VMD) 1.9.3 tools were used to visualize all computational results.</p><h3>Graphical Abstract</h3>\n<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"30 10","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2024-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Intermolecular interactions in water and ethanol solution of ethyl acetate: Raman, DFT, MEP, FMO, AIM, NCI-RDG, ELF, and LOL analyses\",\"authors\":\"Abduvakhid Jumabaev,&nbsp;Stève-Jonathan Koyambo-Konzapa,&nbsp;Hakim Hushvaktov,&nbsp;Ahmad Absanov,&nbsp;Bekzod Khudaykulov,&nbsp;Utkirjon Holikulov,&nbsp;Zokhid Ernazarov,&nbsp;Noureddine Issaoui,&nbsp;Omar M. Al-Dossary,&nbsp;Mama Nsangou\",\"doi\":\"10.1007/s00894-024-06147-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>The intermolecular interactions of ethyl acetate (EtOAc)-water (H<sub>2</sub>O)/ethanol (EtOH) mixtures were investigated using a combination of Raman spectroscopy and quantum chemical calculations. The computational approach was used to analyze the structure of hydrogen-bonded complexes of ethyl acetate with water/ethanol molecules, based on density functional theory (DFT). The calculated frequencies closely matched the experimental Raman values, with differences being under 4%. Experimental data show that when the concentrations of ethyl acetate in the ethyl acetate/water/ethanol solutions were reduced, almost all Raman spectral bands are blue-shifted. The AIM analysis reveals that all the given complexes possess a positive energy density, indicating that the molecules interact electrostatically. The energy and bond length indicate that the methyl group forms relatively weak hydrogen bonds. Analysis indicates that EtOAc forms weak H-bonding C = O∙∙∙H and C-H∙∙∙O, which are recognized as van der Waals interactions. As the amount of ethyl acetate decreases in the complex, the interaction forces also decrease. This could also explain why the bands are blue-shifted. It was discovered that the title complexes’ hydrogen bond energy decreased exponentially as bond length increased.</p><h3>Methods</h3><p>The geometries of the molecular complexes were optimized using the Gaussian 09W program and the B3LYP/6–311 +  + G(d,p) set of functions. The potential energy distribution (PED) analysis was performed using VEDA 4.0 software. Raman spectra were drawn using the Origin 8.5 software. The Multiwfn 3.8 software was used to calculate topological parameters of electron density in molecular systems. GaussView 6.0 and Visual Molecular Dynamics (VMD) 1.9.3 tools were used to visualize all computational results.</p><h3>Graphical Abstract</h3>\\n<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"30 10\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-09-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-024-06147-0\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-024-06147-0","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:通过拉曼光谱和量子化学计算相结合的方法研究了乙酸乙酯(EtOAc)-水(H2O)/乙醇(EtOH)混合物的分子间相互作用。计算方法基于密度泛函理论(DFT),用于分析醋酸乙酯与水/乙醇分子的氢键络合物结构。计算出的频率与拉曼实验值非常吻合,差异小于 4%。实验数据显示,当乙酸乙酯/水/乙醇溶液中的乙酸乙酯浓度降低时,几乎所有拉曼光谱带都发生了蓝移。AIM 分析显示,所有给定的复合物都具有正能量密度,表明分子之间存在静电相互作用。能量和键长表明甲基形成的氢键相对较弱。分析表明,EtOAc 形成了 C = O∙∙H 和 C-H∙∙O 的弱氢键,这被认为是范德华相互作用。随着复合物中乙酸乙酯含量的减少,相互作用力也随之降低。这也可以解释为什么带会发生蓝移。研究发现,随着键长的增加,标题配合物的氢键能呈指数下降:方法:使用高斯 09W 程序和 B3LYP/6-311 + + G(d,p)函数集优化了分子配合物的几何结构。利用 VEDA 4.0 软件进行了势能分布 (PED) 分析。拉曼光谱使用 Origin 8.5 软件绘制。Multiwfn 3.8 软件用于计算分子系统中电子密度的拓扑参数。所有计算结果均使用 GaussView 6.0 和 Visual Molecular Dynamics (VMD) 1.9.3 工具进行可视化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Intermolecular interactions in water and ethanol solution of ethyl acetate: Raman, DFT, MEP, FMO, AIM, NCI-RDG, ELF, and LOL analyses

Context

The intermolecular interactions of ethyl acetate (EtOAc)-water (H2O)/ethanol (EtOH) mixtures were investigated using a combination of Raman spectroscopy and quantum chemical calculations. The computational approach was used to analyze the structure of hydrogen-bonded complexes of ethyl acetate with water/ethanol molecules, based on density functional theory (DFT). The calculated frequencies closely matched the experimental Raman values, with differences being under 4%. Experimental data show that when the concentrations of ethyl acetate in the ethyl acetate/water/ethanol solutions were reduced, almost all Raman spectral bands are blue-shifted. The AIM analysis reveals that all the given complexes possess a positive energy density, indicating that the molecules interact electrostatically. The energy and bond length indicate that the methyl group forms relatively weak hydrogen bonds. Analysis indicates that EtOAc forms weak H-bonding C = O∙∙∙H and C-H∙∙∙O, which are recognized as van der Waals interactions. As the amount of ethyl acetate decreases in the complex, the interaction forces also decrease. This could also explain why the bands are blue-shifted. It was discovered that the title complexes’ hydrogen bond energy decreased exponentially as bond length increased.

Methods

The geometries of the molecular complexes were optimized using the Gaussian 09W program and the B3LYP/6–311 +  + G(d,p) set of functions. The potential energy distribution (PED) analysis was performed using VEDA 4.0 software. Raman spectra were drawn using the Origin 8.5 software. The Multiwfn 3.8 software was used to calculate topological parameters of electron density in molecular systems. GaussView 6.0 and Visual Molecular Dynamics (VMD) 1.9.3 tools were used to visualize all computational results.

Graphical Abstract

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
期刊最新文献
Insight into the structural and dynamic properties of novel HSP90 inhibitors through DFT calculations and molecular dynamics simulations Improved energy equations and thermal functions for diatomic molecules: a generalized fractional derivative approach NO2 properties that affect its reaction with pristine and Pt-doped SnS2: a gas sensor study Theoretical study of the synergistic effect between glyceryl monooleate lubricant and carboxymethylcellulose in reducing the coefficient of friction of water-based drilling fluids Constructing, in silico, molecular self-aggregates and micro-hydrated complexes of oxirene and thiirene
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1