整合动态模型和神经网络,发现气象因素对伊蚊种群的影响机制。

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS PLoS Computational Biology Pub Date : 2024-09-27 eCollection Date: 2024-09-01 DOI:10.1371/journal.pcbi.1012499
Mengze Zhang, Xia Wang, Sanyi Tang
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引用次数: 0

摘要

伊蚊被称为蚊媒疾病的传播媒介,对公共健康和安全构成重大风险。由于伊蚊的生物机制和环境因素之间存在复杂的相互作用,因此需要综合的方法来模拟伊蚊的种群动态。本研究建立了一个将微分方程与神经网络相结合的模型来模拟蚊虫种群动态,并探讨了产卵率、温度和降水之间的关系。研究使用了广东省九个城市四年的数据进行模型训练和参数估计,其余三个城市的数据用于模型验证。训练后的模型使用同一组参数成功模拟了所有 12 个城市的蚊子种群动态。模拟结果与观测数据的相关系数在所有城市都超过了 0.7,部分城市超过了 0.85,显示了模型的高性能。模型中的耦合神经网络有效揭示了产卵率、温度和降水之间的关系,符合生物规律。此外,该模型还采用了符号回归法来确定这些关系的最佳函数表达式。通过将传统的动态模型与机器学习相结合,我们的模型在从数据中提取模式的同时,还能遵循特定的生物机制,从而增强了其在生物学中的可解释性。我们的方法既能提供精确的建模,又能为揭示潜在的未知生物机制提供途径。我们的结论可为设计控制蚊媒疾病的策略以及开发相关预测和预警系统提供有价值的见解。
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Integrating dynamic models and neural networks to discover the mechanism of meteorological factors on Aedes population.

Aedes mosquitoes, known as vectors of mosquito-borne diseases, pose significant risks to public health and safety. Modeling the population dynamics of Aedes mosquitoes requires comprehensive approaches due to the complex interplay between biological mechanisms and environmental factors. This study developed a model that couples differential equations with a neural network to simulate the dynamics of mosquito population, and explore the relationships between oviposition rate, temperature, and precipitation. Data from nine cities in Guangdong Province spanning four years were used for model training and parameter estimation, while data from the remaining three cities were reserved for model validation. The trained model successfully simulated the mosquito population dynamics across all twelve cities using the same set of parameters. Correlation coefficients between simulated results and observed data exceeded 0.7 across all cities, with some cities surpassing 0.85, demonstrating high model performance. The coupled neural network in the model effectively revealed the relationships among oviposition rate, temperature, and precipitation, aligning with biological patterns. Furthermore, symbolic regression was used to identify the optimal functional expression for these relationships. By integrating the traditional dynamic model with machine learning, our model can adhere to specific biological mechanisms while extracting patterns from data, thus enhancing its interpretability in biology. Our approach provides both accurate modeling and an avenue for uncovering potential unknown biological mechanisms. Our conclusions can provide valuable insights into designing strategies for controlling mosquito-borne diseases and developing related prediction and early warning systems.

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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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