网络药理学与分子对接和分子动力学相结合,验证绿豆(Vigna radiata)对前列腺癌的治疗潜力

IF 2.5 Q2 MULTIDISCIPLINARY SCIENCES Beni-Suef University Journal of Basic and Applied Sciences Pub Date : 2024-10-02 DOI:10.1186/s43088-024-00552-3
Dio Syahputra, Ysrafil Ysrafil, Francisca Diana Alexandra, Rian Ka Praja, Fatmaria Fatmaria, Remi Ayu Pratika
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引用次数: 0

摘要

背景前列腺癌是男性最常见的肿瘤疾病,也是导致全球男性死亡的主要原因之一。越来越多的证据表明,绿豆生物活性化合物能有效抑制各种癌细胞。然而,绿豆生物活性化合物对前列腺癌的影响及其内在机制尚未得到证实。本研究旨在探讨绿豆化合物对前列腺癌的治疗效果和内在机制。结果研究结果显示,绿豆可调节 56 种与前列腺癌相关的蛋白质,包括 SRC(肉瘤)、丝裂原活化蛋白激酶 8(MAPK8)、热休克蛋白 90 kDa alpha 成员 A1(HSP90AA1)和哈维鼠肉瘤病毒(HRAS)中的几种重要蛋白质。研究还发现,与前列腺癌发病机制相关的潜在途径包括嘧啶代谢、氮代谢和催乳素信号途径。在与四种关键蛋白对接的 19 种绿豆化合物中,有三种化合物(杜仲苷、芍药苷-3-葡萄糖苷和绿原酸)的作用位点与 SRC、MAPK8、HSP90AA1 和 HRAS 的结合亲和力较低,分别为 - 7.7、- 12.2、- 9.0 和 - 6.5 kcal/mol。动态模拟结果还显示,Dulcinoside-SRC、Dulcinoside-MAPK8 和 P3G-HSP90AA1 复合物的结合值分别为 - 36.52 ± 2.93、- 35.93 ± 1.67 和 - 35.77 ± 1.17 kJ/mol。化合物与蛋白质的结合稳定而灵活。此外,所有绿豆化合物都具有良好的 ADMET 特性。尽管如此,还需要进一步开展体外和体内研究,以优化和证明绿豆及其化合物对前列腺癌的疗效。
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Network pharmacology combined with molecular docking and molecular dynamics to verify the therapeutic potential of mung beans (Vigna radiata) against prostate cancer

Background

Prostate cancer is the most common oncological disease in men and one of leading causes of death worldwide. Growing evidence has demonstrated the effectiveness of mung bean bioactive compounds in suppressing various cancer cells. However, their effects and underlying mechanisms on prostate cancer have not been verified. The present study aimed to investigate the therapeutical effects and underlying mechanisms of mung bean compounds against prostate cancer.

Results

The results revealed that 56 proteins related to prostate cancer could be modulated by mung bean, including several vital proteins of SRC (Sarcoma), Mitogen-Activated Protein Kinase 8 (MAPK8), Heat shock protein 90 kDa alpha member A1 (HSP90AA1), and Harvey Rat sarcoma virus (HRAS). It was also found that the potential pathways associated with prostate cancer pathogenesis comprising pyrimidine metabolism, nitrogen metabolism, and prolactin signaling pathways. Of 19 mung bean compounds docked to four key proteins reveal three promising compound (dulcinoside, peonidin-3-glucoside, and chlorogenic acid) with lower binding affinity score of − 7.7, − 12.2, − 9.0, and − 6.5 kcal/mol against SRC, MAPK8, HSP90AA1, and HRAS, respectively in their site of action. Dynamic simulation results also showed values of − 36.52 ± 2.93, − 35.93 ± 1.67, and − 35.77 ± 1.17 kJ/mol for Dulcinoside-SRC, Dulcinoside-MAPK8, and P3G-HSP90AA1 complexes, respectively. The binding of the compound occur in stable and flexible with the proteins. Moreover, all mung bean compounds predicted to have good ADMET properties.

Conclusions

The study concluded that dulcinoside, peonidin-3-glucoside, and chlorogenic acid potentially exhibited anticancer activity against prostate cancer in silico. Nevertheless, further studies such as in vitro and in vivo are needed to optimize and prove the efficacy of the mung brand and its compounds against prostate cancer.

Graphical abstract

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期刊介绍: Beni-Suef University Journal of Basic and Applied Sciences (BJBAS) is a peer-reviewed, open-access journal. This journal welcomes submissions of original research, literature reviews, and editorials in its respected fields of fundamental science, applied science (with a particular focus on the fields of applied nanotechnology and biotechnology), medical sciences, pharmaceutical sciences, and engineering. The multidisciplinary aspects of the journal encourage global collaboration between researchers in multiple fields and provide cross-disciplinary dissemination of findings.
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