单细胞测序与转录组测序相结合探索牛皮癣的分子机制

IF 1.9 4区 医学 Q3 DERMATOLOGY Clinical, Cosmetic and Investigational Dermatology Pub Date : 2024-10-03 eCollection Date: 2024-01-01 DOI:10.2147/CCID.S484034
Cailing E, Rongying Wang, Zudong Meng, Yulin Zou
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引用次数: 0

摘要

背景:银屑病是一种慢性复发性炎症性皮肤病,目前的治疗方法只能缓解症状。目前还没有完全治愈的方法。虽然越来越多的研究支持更好的治疗方法,但其发生的共同机制仍未完全阐明。我们的研究就是要进一步探索这种疾病发生的分子机制:方法:从基因表达总库(Gene Expression Omnibus,GEO)中下载银屑病的基因表达谱(GSE151177、GSE41664、GSE30999)。使用 R 软件识别银屑病常见差异表达基因(DEGs)后,进行了三种分析,即 WGCNA、GWAS 分析和药物靶点预测:结果:共选取了 14 个常见 DEGs 进行后续分析。药物靶点预测分析表明,受甲氨蝶呤、布地奈德、氨基嘌呤醇-a、舒美替尼等药物影响的表达谱与受疾病干扰的表达谱呈负相关。最后,研究发现,S100A4、JAML、TRAF3IP3、MIAT、IL7R和KLRB1在与异体移植排斥反应相关的免疫途径中表达显著。在代谢通路中,氧化磷酸化显示出较高的表达水平,而活性氧通路在信号通路领域有显著表达:我们的研究揭示了银屑病的潜在药物和发病机制。结论:我们的研究揭示了银屑病的潜在药物和发病机制,这些潜在通路和枢纽基因可为进一步的机制研究提供新思路。
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Single-Cell Sequencing Combined with Transcriptome Sequencing to Explore the Molecular Mechanisms Related to Psoriasis.

Background: Psoriasis, a chronic and recurrent inflammatory skin disease, current treatments can only alleviate its symptoms. There is still no complete cure. Although increasing research supports the therapeutics to be better, the common mechanism of its occurrence is still not fully elucidated. Our study is about further explore the molecular mechanism of the occurrence of this disease.

Methods: The gene expression profiles of psoriasis (GSE151177, GSE41664, GSE30999) were downloaded from the Gene Expression Omnibus (GEO) database. After identifying the common differentially expressed genes (DEGs) of psoriasis using R software, three kinds of analyses were performed, namely WGCNA, GWAS Analysis, Drug Target Prediction.

Results: A total of 14 common DEGs was selected for subsequent analyses. Our Drug Target Prediction analysis revealed that the expression profiles influenced by certain drugs, including methotrexate, budesonide, amino purvalanol-a, and selumetinib, exhibited negative correlations with the disease-perturbed expression profiles. Finally, It was found that S100A4, JAML, TRAF3IP3, MIAT, IL7R, and KLRB1 were prominently expressed in the immune pathway related to allograft rejection. In the metabolic pathway, oxidative phosphorylation showed high expression levels, while the reactive oxygen species pathway was notably expressed in the signaling pathways domain.

Conclusion: Our study reveals the potential drugs and pathogenesis of psoriasis. These potential pathway and hub genes may provide new ideas for further mechanism research.

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来源期刊
CiteScore
2.80
自引率
4.30%
发文量
353
审稿时长
16 weeks
期刊介绍: Clinical, Cosmetic and Investigational Dermatology is an international, peer-reviewed, open access journal that focuses on the latest clinical and experimental research in all aspects of skin disease and cosmetic interventions. Normal and pathological processes in skin development and aging, their modification and treatment, as well as basic research into histology of dermal and dermal structures that provide clinical insights and potential treatment options are key topics for the journal. Patient satisfaction, preference, quality of life, compliance, persistence and their role in developing new management options to optimize outcomes for target conditions constitute major areas of interest. The journal is characterized by the rapid reporting of clinical studies, reviews and original research in skin research and skin care. All areas of dermatology will be covered; contributions will be welcomed from all clinicians and basic science researchers globally.
期刊最新文献
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