Yang Li, Yuhong Ding, Yaxin Hou, Lilong Liu, Zhenghao Liu, Zhipeng Yao, Pengjie Shi, Jinxu Li, Ke Chen, Junyi Hu
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Data analysis included unsupervised clustering using the uniform manifold approximation and projection (UMAP) algorithm to identify distinct cell types based on marker gene expression. Differential gene expression analysis was performed to identify age-related changes in gene expression across different cell types. Functional enrichment analysis was conducted to elucidate biological pathways associated with differentially expressed genes. Additionally, cellular interactions and developmental trajectories were analyzed to characterize cellular dynamics during prostate aging.</p><p><strong>Results: </strong>The single-cell transcriptome analysis of the mouse prostate during aging revealed heterogeneity across various cell types and their changes during the aging process. We found a significant increase in the proportion of mesenchymal and immune cells in aged mice. 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引用次数: 0
摘要
背景:男性前列腺的老化是一个不可避免的过程,在这一过程中,前列腺会发生增生,这种增生可能会导致尿道受压,造成排尿功能障碍和相关症状,并增加患前列腺癌的风险。尽管前列腺老化意义重大,但相关的分子机制仍未完全明了:收集幼鼠(2 个月)和老鼠(24 个月)的前列腺分叶,进行单细胞 RNA 测序(scRNA-seq)分析。研究包括前列腺前叶(AP)和前列腺腹侧/背侧/侧叶(VDLP)的组织。数据分析包括使用统一流形近似和投影(UMAP)算法进行无监督聚类,根据标记基因的表达确定不同的细胞类型。进行了差异基因表达分析,以确定不同细胞类型中与年龄相关的基因表达变化。进行了功能富集分析,以阐明与差异表达基因相关的生物通路。此外,还分析了细胞相互作用和发育轨迹,以描述前列腺衰老过程中的细胞动态:结果:对衰老过程中小鼠前列腺的单细胞转录组分析显示了衰老过程中各种细胞类型的异质性及其变化。我们发现衰老小鼠间质细胞和免疫细胞的比例明显增加。我们的研究揭示了与细胞衰老、氧化应激和上皮细胞再生相关的基因和通路的变化。此外,我们还观察到基底细胞可能发生上皮-间充质转化(EMT),成为间充质细胞,这在老年小鼠中尤为突出。此外,免疫细胞,尤其是巨噬细胞和 T 细胞,在老年小鼠中表现出更强的炎症反应:总之,我们的研究对老年小鼠和年轻小鼠前列腺的单细胞转录组进行了比较分析,阐明了老年小鼠和年轻小鼠前列腺的细胞和分子变化。
Single-cell analysis reveals alternations between the aged and young mice prostates.
Background: Aging of the male prostate is an inevitable process in which the prostate undergoes hyperplasia, and this growth may lead to compression of the urethra, resulting in voiding dysfunction and associated symptoms, and an increased risk of prostate cancer. Despite the significance of prostate aging, the molecular mechanisms involved are still not fully understood.
Methods: Prostate split by lobes from young (2 months) and aged (24 months) mice were collected for single-cell RNA sequencing (scRNA-seq) analysis. Tissues from both anterior prostate (AP) and ventral/dorsal/lateral prostate (VDLP) were included in the study. Data analysis included unsupervised clustering using the uniform manifold approximation and projection (UMAP) algorithm to identify distinct cell types based on marker gene expression. Differential gene expression analysis was performed to identify age-related changes in gene expression across different cell types. Functional enrichment analysis was conducted to elucidate biological pathways associated with differentially expressed genes. Additionally, cellular interactions and developmental trajectories were analyzed to characterize cellular dynamics during prostate aging.
Results: The single-cell transcriptome analysis of the mouse prostate during aging revealed heterogeneity across various cell types and their changes during the aging process. We found a significant increase in the proportion of mesenchymal and immune cells in aged mice. Our study unveiled alterations in genes and pathways associated with cellular senescence, oxidative stress, and regeneration in epithelial cells. Furthermore, we observed that basal cells may undergo epithelial-mesenchymal transition (EMT) to become mesenchymal cells, particularly prominent in aged mice. Additionally, immune cells, notably macrophages and T cells, exhibited a heightened inflammatory response in aged mice.
Conclusion: In summary, our study provides a comparative analysis of the single-cell transcriptome of the aged and young mice prostates, elucidating cellular and molecular changes between the aged and young mice prostates.
Biomarker ResearchBiochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
15.80
自引率
1.80%
发文量
80
审稿时长
10 weeks
期刊介绍:
Biomarker Research, an open-access, peer-reviewed journal, covers all aspects of biomarker investigation. It seeks to publish original discoveries, novel concepts, commentaries, and reviews across various biomedical disciplines. The field of biomarker research has progressed significantly with the rise of personalized medicine and individual health. Biomarkers play a crucial role in drug discovery and development, as well as in disease diagnosis, treatment, prognosis, and prevention, particularly in the genome era.