作为非完全同步原理描述符的反作用力常数。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-10-10 DOI:10.1007/s00894-024-06151-4
César Barrales-Martínez, Danilo J. Carmona, Javier Oller, Andrés F. Flor-Lopez, Kevin Urrutia-Fernández, Sebastián Richter, Agustín Albornoz, Jorge Martínez-Araya, Pablo Jaque
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引用次数: 0

摘要

背景:本研究介绍了一小组以相同放热率进行的 1,3-二极环化反应。我们的主要目的是扩展反应力常数概念的应用,以了解反应性原理。受最近一篇文章的启发,我们证明了贝尔-埃文斯-波兰尼原理在同等同步程度的条件下得以实现,在此,我们证明了反应力常数也是量化贝尔纳斯科尼提出的非完全同步原理的合适描述符,是理解贝尔-埃文斯-波兰尼原理偏差的一种方法:反应曲线 V ( ξ ) 、F ( ξ ) 和 κ ( ξ ) 是在 B3LYP/6-31G(d,p) 理论水平下进行的。使用能量分解分析结合化合价自然轨道(EDA-NOCV)方法对稳定相互作用进行了表征。本研究使用了高斯 09 和 Multiwfn 程序。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Reaction force constant as a descriptor of the principle of non-perfect synchronization

Context

In this study, a small set of 1,3-dipolar cycloaddition reactions that proceed at the same exothermicity is presented. Our main objective was to extend the application of the reaction force constant concept to gain an understanding of the reactivity principles. Inspired by a recent article where we show that the Bell-Evans-Polanyi principle is fulfilled under the condition of an equal degree of (a)synchronicity, here, we demonstrate that the reaction force constant is also a suitable descriptor to quantify the principle of non-perfect synchronization proposed by Bernasconi as a way to understand deviations from the Bell-Evans-Polanyi principle.

Methods

Reaction profiles \(V(\xi )\), \(F(\xi )\), and \(\kappa (\xi )\) were performed at the B3LYP/6-31G(d,p) level of theory. The stabilizing interactions were characterized using the energy decomposition analysis combined with the natural orbitals for chemical valence, EDA-NOCV, method. The present work was done using Gaussian 09 and Multiwfn programs.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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