Serena Grazia De Benedictis , Grazia Gargano , Gaetano Settembre
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When paired with the ML classifier output, this additional information can help domain experts to identify areas of interest that might contain tumor signatures, improving the interpretability of ML predictions. When compared to automated diagnoses, this transparency adds another level of confidence and is essential for clinical acceptance. The performance of the system was quantitatively evaluated on a well-known MRI dataset, with an overall classification accuracy of 97.28% using an extremely randomized trees model. The promising results show that the integration of TDA, ML, and low-rank approximation methods is a successful approach for brain tumor identification and categorization, providing a solid foundation for further study and clinical application.</div></div>","PeriodicalId":100768,"journal":{"name":"Journal of Computational Mathematics and Data Science","volume":"13 ","pages":"Article 100103"},"PeriodicalIF":0.0000,"publicationDate":"2024-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Enhanced MRI brain tumor detection and classification via topological data analysis and low-rank tensor decomposition\",\"authors\":\"Serena Grazia De Benedictis , Grazia Gargano , Gaetano Settembre\",\"doi\":\"10.1016/j.jcmds.2024.100103\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The advent of artificial intelligence in medical imaging has paved the way for significant advancements in the diagnosis of brain tumors. This study presents a novel ensemble approach that uses magnetic resonance imaging (MRI) to identify and categorize common brain cancers, such as pituitary, meningioma, and glioma. The proposed workflow is composed of a two-fold approach: firstly, it employs non-trivial image enhancement techniques in data preprocessing, low-rank Tucker decomposition for dimensionality reduction, and machine learning (ML) classifiers to detect and predict the type of brain tumor. Secondly, persistent homology (PH), a topological data analysis (TDA) technique, is exploited to extract potential critical areas in MRI scans. When paired with the ML classifier output, this additional information can help domain experts to identify areas of interest that might contain tumor signatures, improving the interpretability of ML predictions. When compared to automated diagnoses, this transparency adds another level of confidence and is essential for clinical acceptance. The performance of the system was quantitatively evaluated on a well-known MRI dataset, with an overall classification accuracy of 97.28% using an extremely randomized trees model. The promising results show that the integration of TDA, ML, and low-rank approximation methods is a successful approach for brain tumor identification and categorization, providing a solid foundation for further study and clinical application.</div></div>\",\"PeriodicalId\":100768,\"journal\":{\"name\":\"Journal of Computational Mathematics and Data Science\",\"volume\":\"13 \",\"pages\":\"Article 100103\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-10-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Computational Mathematics and Data Science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2772415824000142\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Mathematics and Data Science","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2772415824000142","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
医学成像领域人工智能的出现为脑肿瘤诊断的重大进展铺平了道路。本研究提出了一种新颖的组合方法,利用磁共振成像(MRI)来识别和分类垂体瘤、脑膜瘤和胶质瘤等常见脑癌。所提出的工作流程由两方面的方法组成:首先,它在数据预处理中采用了非琐碎的图像增强技术、用于降维的低秩塔克分解以及机器学习(ML)分类器来检测和预测脑肿瘤的类型。其次,利用拓扑数据分析(TDA)技术 "持久同源性"(PH)提取磁共振成像扫描中的潜在关键区域。当与 ML 分类器输出配对时,这些附加信息可以帮助领域专家识别可能包含肿瘤特征的感兴趣区域,从而提高 ML 预测的可解释性。与自动诊断相比,这种透明度增加了另一个层次的信心,对临床接受度至关重要。该系统的性能在一个著名的磁共振成像数据集上进行了定量评估,使用极随机树模型的总体分类准确率为 97.28%。这些令人鼓舞的结果表明,TDA、ML 和低阶近似方法的集成是脑肿瘤识别和分类的一种成功方法,为进一步研究和临床应用奠定了坚实的基础。
Enhanced MRI brain tumor detection and classification via topological data analysis and low-rank tensor decomposition
The advent of artificial intelligence in medical imaging has paved the way for significant advancements in the diagnosis of brain tumors. This study presents a novel ensemble approach that uses magnetic resonance imaging (MRI) to identify and categorize common brain cancers, such as pituitary, meningioma, and glioma. The proposed workflow is composed of a two-fold approach: firstly, it employs non-trivial image enhancement techniques in data preprocessing, low-rank Tucker decomposition for dimensionality reduction, and machine learning (ML) classifiers to detect and predict the type of brain tumor. Secondly, persistent homology (PH), a topological data analysis (TDA) technique, is exploited to extract potential critical areas in MRI scans. When paired with the ML classifier output, this additional information can help domain experts to identify areas of interest that might contain tumor signatures, improving the interpretability of ML predictions. When compared to automated diagnoses, this transparency adds another level of confidence and is essential for clinical acceptance. The performance of the system was quantitatively evaluated on a well-known MRI dataset, with an overall classification accuracy of 97.28% using an extremely randomized trees model. The promising results show that the integration of TDA, ML, and low-rank approximation methods is a successful approach for brain tumor identification and categorization, providing a solid foundation for further study and clinical application.