Ying Chen , Yukai Wang , David Hidalgo Delgado , Huaxu Yu , Tingting Zhao , Mingliang Fang , Tao Huan
{"title":"构建 HairDB,促进利用人类头发开展暴露组研究","authors":"Ying Chen , Yukai Wang , David Hidalgo Delgado , Huaxu Yu , Tingting Zhao , Mingliang Fang , Tao Huan","doi":"10.1016/j.envint.2024.109077","DOIUrl":null,"url":null,"abstract":"<div><div>This study introduces HairDB, an online database serving as a comprehensive repository of hair-related chemicals for exposome research. HairDB was created via an integrative approach. It first extracted 4,184 unique hair-related chemicals through text mining of over 34 million PubMed abstracts and 5.2 million PubMed Central articles, followed by manual data checking. HairDB also applied an artificial intelligence-enabled search to discover organic aerosol biomarkers in literature. A set of 768 chemicals used in hair-related products was then curated through a combination of manual searches and data extraction from the Cosmetic Ingredient Database (CosIng) of the European Union. From manually reading review papers, 29 organic aerosol biomarkers were extracted. Furthermore, 3,679 known exposure chemicals extracted from the Toxin and Toxin Target Database (T3DB) were incorporated in HairDB to represent the possible environmental exposures detected on hair surfaces. The comprehensive set of chemicals captured in HairDB represents the current knowledge of what can be found in and on hair. HairDB was constructed as a user-friendly web interface, allowing easy exploration of hair-related chemicals and tailored for annotating mass spectrometry-based hair exposomics data. The development of HairDB marks an important step forward in using hair as a biological matrix for chemical exposure measurement, facilitating the adoption of hair for exposome research. HairDB is publicly available at <span><span><u>https://www.hairdb.ca/</u></span><svg><path></path></svg></span>.</div></div>","PeriodicalId":308,"journal":{"name":"Environment International","volume":"193 ","pages":"Article 109077"},"PeriodicalIF":10.3000,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Constructing HairDB to facilitate exposome research using human hair\",\"authors\":\"Ying Chen , Yukai Wang , David Hidalgo Delgado , Huaxu Yu , Tingting Zhao , Mingliang Fang , Tao Huan\",\"doi\":\"10.1016/j.envint.2024.109077\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This study introduces HairDB, an online database serving as a comprehensive repository of hair-related chemicals for exposome research. HairDB was created via an integrative approach. It first extracted 4,184 unique hair-related chemicals through text mining of over 34 million PubMed abstracts and 5.2 million PubMed Central articles, followed by manual data checking. HairDB also applied an artificial intelligence-enabled search to discover organic aerosol biomarkers in literature. A set of 768 chemicals used in hair-related products was then curated through a combination of manual searches and data extraction from the Cosmetic Ingredient Database (CosIng) of the European Union. From manually reading review papers, 29 organic aerosol biomarkers were extracted. Furthermore, 3,679 known exposure chemicals extracted from the Toxin and Toxin Target Database (T3DB) were incorporated in HairDB to represent the possible environmental exposures detected on hair surfaces. The comprehensive set of chemicals captured in HairDB represents the current knowledge of what can be found in and on hair. HairDB was constructed as a user-friendly web interface, allowing easy exploration of hair-related chemicals and tailored for annotating mass spectrometry-based hair exposomics data. The development of HairDB marks an important step forward in using hair as a biological matrix for chemical exposure measurement, facilitating the adoption of hair for exposome research. 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Constructing HairDB to facilitate exposome research using human hair
This study introduces HairDB, an online database serving as a comprehensive repository of hair-related chemicals for exposome research. HairDB was created via an integrative approach. It first extracted 4,184 unique hair-related chemicals through text mining of over 34 million PubMed abstracts and 5.2 million PubMed Central articles, followed by manual data checking. HairDB also applied an artificial intelligence-enabled search to discover organic aerosol biomarkers in literature. A set of 768 chemicals used in hair-related products was then curated through a combination of manual searches and data extraction from the Cosmetic Ingredient Database (CosIng) of the European Union. From manually reading review papers, 29 organic aerosol biomarkers were extracted. Furthermore, 3,679 known exposure chemicals extracted from the Toxin and Toxin Target Database (T3DB) were incorporated in HairDB to represent the possible environmental exposures detected on hair surfaces. The comprehensive set of chemicals captured in HairDB represents the current knowledge of what can be found in and on hair. HairDB was constructed as a user-friendly web interface, allowing easy exploration of hair-related chemicals and tailored for annotating mass spectrometry-based hair exposomics data. The development of HairDB marks an important step forward in using hair as a biological matrix for chemical exposure measurement, facilitating the adoption of hair for exposome research. HairDB is publicly available at https://www.hairdb.ca/.
期刊介绍:
Environmental Health publishes manuscripts focusing on critical aspects of environmental and occupational medicine, including studies in toxicology and epidemiology, to illuminate the human health implications of exposure to environmental hazards. The journal adopts an open-access model and practices open peer review.
It caters to scientists and practitioners across all environmental science domains, directly or indirectly impacting human health and well-being. With a commitment to enhancing the prevention of environmentally-related health risks, Environmental Health serves as a public health journal for the community and scientists engaged in matters of public health significance concerning the environment.