利用深度学习计算筛选鲜味剂。

IF 3.9 2区 化学 Q2 CHEMISTRY, APPLIED Molecular Diversity Pub Date : 2024-10-18 DOI:10.1007/s11030-024-11006-4
Prantar Dutta, Kishore Gajula, Nitu Verma, Deepak Jain, Rakesh Gupta, Beena Rai
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引用次数: 0

摘要

鲜味是人类的一种基本味觉模式,指肉类和肉汤中的咸味,通常与味精和丰富的蛋白质有关。由于对鲜味分子的了解有限,食品行业一直在寻求有效的方法来识别新型鲜味剂。在这项研究中,我们设计了一个虚拟筛选管道,用于从大型分子数据库中识别高效力的鲜味剂。我们整理了包含 439 种鲜味分子和 428 种非鲜味分子的最广泛的分类数据集,并训练了一种基于变压器的架构来区分这两个类别,准确率达到 93%。此外,我们还建立了一个神经网络模型,用于预测鲜味化合物的效力,这在同类研究中尚属首次。我们将分类和功效预测模型与相似性分析和毒性筛选相结合,建立了一个端到端的虚拟框架,用于合理发现新型鲜味剂。我们将这一框架应用于包含约 70,000 个分子的 FooDB 数据库,作为筛选强效鲜味化合物的示例用例。筛选出的分子与鲜味受体进行了分子对接验证。这项研究证明了数据驱动方法在从分子的结构和化学特征中发现新鲜味剂方面的潜力,并为工业应用提出了一种有效的实施方法。
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Computational screening of umami tastants using deep learning.

Umami, a fundamental human taste modality, refers to the savory flavors in meats and broths, often associated with monosodium glutamate and protein richness. With limited knowledge of umami molecules, the food industry seeks efficient approaches for identifying novel tastants. In this study, we have devised a virtual screening pipeline for identifying highly potent umami tastants from large molecular databases. We curated the most extensive classification dataset containing 439 umami and 428 non-umami molecules and trained a transformer-based architecture to differentiate between the two classes, achieving 93% accuracy. Additionally, we built a neural network model for predicting the potency of umami compounds, the first effort of its kind. The classification and potency prediction models were combined with similarity analysis and toxicity screening to build an end-to-end virtual framework for the rational discovery of novel tastants. We applied this framework to the FooDB database containing around 70,000 molecules as an illustrative use case for screening potent umami compounds. The screened molecules were validated using molecular docking with the umami taste receptor. This study demonstrates the potential of data-driven methods in discovering new tastants from structural and chemical features of molecules and proposes an efficient implementation for industrial applications.

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来源期刊
Molecular Diversity
Molecular Diversity 化学-化学综合
CiteScore
7.30
自引率
7.90%
发文量
219
审稿时长
2.7 months
期刊介绍: Molecular Diversity is a new publication forum for the rapid publication of refereed papers dedicated to describing the development, application and theory of molecular diversity and combinatorial chemistry in basic and applied research and drug discovery. The journal publishes both short and full papers, perspectives, news and reviews dealing with all aspects of the generation of molecular diversity, application of diversity for screening against alternative targets of all types (biological, biophysical, technological), analysis of results obtained and their application in various scientific disciplines/approaches including: combinatorial chemistry and parallel synthesis; small molecule libraries; microwave synthesis; flow synthesis; fluorous synthesis; diversity oriented synthesis (DOS); nanoreactors; click chemistry; multiplex technologies; fragment- and ligand-based design; structure/function/SAR; computational chemistry and molecular design; chemoinformatics; screening techniques and screening interfaces; analytical and purification methods; robotics, automation and miniaturization; targeted libraries; display libraries; peptides and peptoids; proteins; oligonucleotides; carbohydrates; natural diversity; new methods of library formulation and deconvolution; directed evolution, origin of life and recombination; search techniques, landscapes, random chemistry and more;
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