俄罗斯的生物信息学:历史与现状。

IF 6.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Briefings in bioinformatics Pub Date : 2024-09-23 DOI:10.1093/bib/bbae513
Muhammad A Nawaz, Igor E Pamirsky, Kirill S Golokhvast
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引用次数: 0

摘要

由于生物信息学在分子生物学研究中的普遍作用,它已成为一门跨学科学科。俄罗斯的生物信息学研究现状尚不清楚。在此,我们回顾了俄罗斯生物信息学的历史,介绍了目前的状况,并强调了未来的方向和挑战。俄罗斯的生物信息学研究主要由四大产业驱动:信息技术、制药、生物技术和农业。在过去的三十年中,尽管起步较晚,但该领域的发展势头良好,尤其是在蛋白质和核酸研究方面。基因组学、蛋白质组学和生物信息学的专用和共享中心活跃在俄罗斯的不同地区。当今俄罗斯生物信息学的特点是与遗传学、元基因组学、OMICs、医学信息学、计算生物学、环境信息学和结构生物信息学有关的研究问题。在软件(工具、算法和管道)、高计算能力的使用(如西伯利亚超级计算机中心)和大规模测序项目(10 万个人类基因组的测序)等领域取得了显著发展。政府的资金正在增加,政策正在改变,国家基因组信息数据库正在建立。对真核基因组测序的日益重视,为开发人员和研究人员开发共享工具和数据的共同场所,以及生物建模、机器学习和生物统计学的应用,都是未来重点关注的领域。大学和研究机构已开始实施生物信息学模块。要跟上全球生物信息学的发展步伐,必须有足够数量的生物信息学家。
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Bioinformatics in Russia: history and present-day landscape.

Bioinformatics has become an interdisciplinary subject due to its universal role in molecular biology research. The current status of Russia's bioinformatics research in Russia is not known. Here, we review the history of bioinformatics in Russia, present the current landscape, and highlight future directions and challenges. Bioinformatics research in Russia is driven by four major industries: information technology, pharmaceuticals, biotechnology, and agriculture. Over the past three decades, despite a delayed start, the field has gained momentum, especially in protein and nucleic acid research. Dedicated and shared centers for genomics, proteomics, and bioinformatics are active in different regions of Russia. Present-day bioinformatics in Russia is characterized by research issues related to genetics, metagenomics, OMICs, medical informatics, computational biology, environmental informatics, and structural bioinformatics. Notable developments are in the fields of software (tools, algorithms, and pipelines), use of high computation power (e.g. by the Siberian Supercomputer Center), and large-scale sequencing projects (the sequencing of 100 000 human genomes). Government funding is increasing, policies are being changed, and a National Genomic Information Database is being established. An increased focus on eukaryotic genome sequencing, the development of a common place for developers and researchers to share tools and data, and the use of biological modeling, machine learning, and biostatistics are key areas for future focus. Universities and research institutes have started to implement bioinformatics modules. A critical mass of bioinformaticians is essential to catch up with the global pace in the discipline.

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来源期刊
Briefings in bioinformatics
Briefings in bioinformatics 生物-生化研究方法
CiteScore
13.20
自引率
13.70%
发文量
549
审稿时长
6 months
期刊介绍: Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data. The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.
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