REVEALS:用于啮齿动物行为采集的开源多摄像头图形用户界面。

IF 2.9 2区 医学 Q2 NEUROSCIENCES Cerebral cortex Pub Date : 2024-10-03 DOI:10.1093/cercor/bhae421
Rhushikesh A Phadke, Austin M Wetzel, Luke A Fournier, Alison Brack, Mingqi Sha, Nicole M Padró-Luna, Ryan Williamson, Jeff Demas, Alberto Cruz-Martín
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引用次数: 0

摘要

解密小鼠丰富的行为剧目对于了解健康和患病大脑的功能至关重要。然而,目前缺乏有效、经济、便捷的方法来获取此类数据,尤其是在同时使用多台摄像机的情况下。我们开发了 REVEALS(啮齿动物行为多相机实验室采集),这是一种通过常用 USB3 相机采集啮齿动物行为数据的图形用户界面。REVEALS 允许用户方便地控制一台或多台摄像机同时进行记录,同时简化数据采集过程,使研究人员能够高效地收集和分析大型数据集。我们将该软件包作为一个独立的开源框架发布,供研究人员使用并根据自己的需要进行修改。我们介绍了图形用户界面的实施细节,包括相机控制软件和视频录制功能。我们验证了使用 DeepLabCut 在各种行为任务中捕捉啮齿动物行为的图形用户界面的稳定性、可靠性和准确性。REVEALS 可以整合到现有的 DeepLabCut、MoSeq 或其他定制管道中,用于分析复杂的行为。总之,REVEALS 提供了一个从单个或多个角度收集行为数据的接口,结合深度学习算法,科学界就能识别和描述复杂的行为表型。
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REVEALS: an open-source multi-camera GUI for rodent behavior acquisition.

Deciphering the rich repertoire of mouse behavior is crucial for understanding the functions of both the healthy and diseased brain. However, the current landscape lacks effective, affordable, and accessible methods for acquiring such data, especially when employing multiple cameras simultaneously. We have developed REVEALS (Rodent Behavior Multi-Camera Laboratory Acquisition), a graphical user interface for acquiring rodent behavioral data via commonly used USB3 cameras. REVEALS allows for user-friendly control of recording from one or multiple cameras simultaneously while streamlining the data acquisition process, enabling researchers to collect and analyze large datasets efficiently. We release this software package as a stand-alone, open-source framework for researchers to use and modify according to their needs. We describe the details of the graphical user interface implementation, including the camera control software and the video recording functionality. We validate results demonstrating the graphical user interface's stability, reliability, and accuracy for capturing rodent behavior using DeepLabCut in various behavioral tasks. REVEALS can be incorporated into existing DeepLabCut, MoSeq, or other custom pipelines to analyze complex behavior. In summary, REVEALS offers an interface for collecting behavioral data from single or multiple perspectives, which, when combined with deep learning algorithms, enables the scientific community to identify and characterize complex behavioral phenotypes.

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来源期刊
Cerebral cortex
Cerebral cortex 医学-神经科学
CiteScore
6.30
自引率
8.10%
发文量
510
审稿时长
2 months
期刊介绍: Cerebral Cortex publishes papers on the development, organization, plasticity, and function of the cerebral cortex, including the hippocampus. Studies with clear relevance to the cerebral cortex, such as the thalamocortical relationship or cortico-subcortical interactions, are also included. The journal is multidisciplinary and covers the large variety of modern neurobiological and neuropsychological techniques, including anatomy, biochemistry, molecular neurobiology, electrophysiology, behavior, artificial intelligence, and theoretical modeling. In addition to research articles, special features such as brief reviews, book reviews, and commentaries are included.
期刊最新文献
My science and career with Joseph E. LeDoux. Individual differences in functional connectivity during suppression of imagined threat. When emotion and time meet from human and rodent perspectives: a central role for the amygdala? Introspective psychophysics for the study of subjective experience. Examining threat responses through a developmental lens.
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