先验视觉引导的自我监督学习实现了高通量显微成像的色彩晕影校正。

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS IEEE Journal of Biomedical and Health Informatics Pub Date : 2024-10-16 DOI:10.1109/JBHI.2024.3471907
Jianhang Wang, Tianyu Ma, Luhong Jin, Yunqi Zhu, Jiahui Yu, Feng Chen, Shujun Fu, Yingke Xu
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引用次数: 0

摘要

渐晕是一种普遍存在的光学退化现象,严重影响了生物医学显微成像的质量。然而,目前仍缺乏一种稳健高效的多通道显微图像渐晕校正方法。在本文中,我们利用有关显微图像均匀性和渐晕径向衰减特性的先验知识,开发了一种自监督深度学习算法,可实现彩色显微图像中复杂渐晕的去除。我们提出的方法--晕影校正查找表(VCLUT)--可在单幅和多幅图像上进行训练,它采用对抗学习,有效地将良好的成像条件从用户视觉定义的自身光场中心区域转移到整个图像。为了说明其有效性,我们对来自五个不同生物标本的数据进行了单独的校正实验。结果表明,与传统方法相比,VCLUT 的性能有所提高。我们还在病理数据集上进一步检验了它作为基于多图像方法的性能,结果表明它在定性和定量测量方面都优于其他最先进的方法。此外,它还具有跨越不同渐晕强度水平的通用能力和超快的模型计算能力,非常适合集成到数字显微镜的高通量成像管道中。
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Prior Visual-guided Self-supervised Learning Enables Color Vignetting Correction for High-throughput Microscopic Imaging.

Vignetting constitutes a prevalent optical degradation that significantly compromises the quality of biomedical microscopic imaging. However, a robust and efficient vignetting correction methodology in multi-channel microscopic images remains absent at present. In this paper, we take advantage of a prior knowledge about the homogeneity of microscopic images and radial attenuation property of vignetting to develop a self-supervised deep learning algorithm that achieves complex vignetting removal in color microscopic images. Our proposed method, vignetting correction lookup table (VCLUT), is trainable on both single and multiple images, which employs adversarial learning to effectively transfer good imaging conditions from the user visually defined central region of its own light field to the entire image. To illustrate its effectiveness, we performed individual correction experiments on data from five distinct biological specimens. The results demonstrate that VCLUT exhibits enhanced performance compared to classical methods. We further examined its performance as a multi-image-based approach on a pathological dataset, revealing its advantage over other stateof-the-art approaches in both qualitative and quantitative measurements. Moreover, it uniquely possesses the capacity for generalization across various levels of vignetting intensity and an ultra-fast model computation capability, rendering it well-suited for integration into high-throughput imaging pipelines of digital microscopy.

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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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