Dong Min Han, Ji Hoon Jeon, Myeong Seo Jin, Dae Gyu Choi, Jeong Min Kim, Hülya Bayburt, Byeong Jun Choi, Che Ok Jeon
{"title":"Yoonia algicola sp.nov.、Yoonia rhodophyticola sp.nov.和 Yoonia phaeophyticola sp.","authors":"Dong Min Han, Ji Hoon Jeon, Myeong Seo Jin, Dae Gyu Choi, Jeong Min Kim, Hülya Bayburt, Byeong Jun Choi, Che Ok Jeon","doi":"10.1099/ijsem.0.006545","DOIUrl":null,"url":null,"abstract":"<p><p>Three Gram-stain-negative, strictly aerobic, non-motile, oxidase- and catalase-positive, short-rod-shaped bacteria, designated as strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup>, were isolated from marine algae in South Korea. Strain G8-12<sup>T</sup> exhibited optimal growth at 20-25 °C, pH 8.0 and 2.0-2.5% (w/v) NaCl, while strains SS1-5<sup>T</sup> and BS5-3<sup>T</sup> grew optimally at 25 °C, pH 7.0 and 1.5% NaCl. All strains contained ubiquinone-10 as the sole respiratory quinone, with phosphatidylglycerol and phosphatidylcholine as major polar lipids, and C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> and C<sub>16 : 0</sub> as major fatty acids (>5 %); C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> 11-methyl and C<sub>18 : 1</sub> 2-OH were additionally identified as major fatty acids in strain SS1-5<sup>T</sup>. The genomic DNA G+C contents were 57.0, 58.3 and 56.4% for strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup>, respectively. Strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup> exhibited less than 74.8% average nucleotide identity (ANI) and 19.7% digital DNA-DNA hybridization (dDDH) values with each other, indicating that they represent different species. Phylogenetic analyses based on both 16S rRNA gene and genome sequences revealed that strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup> form distinct phylogenetic lineages within the genus <i>Yoonia</i>. Relative to other closely related <i>Yoonia</i> species, these strains exhibited ANI and dDDH values below 83.5 and 26.9%, respectively, suggesting that they constitute novel species within the genus <i>Yoonia</i>. Based on their phenotypic, chemotaxonomic and phylogenetic characteristics, strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup> represent three novel species of the genus <i>Yoonia</i>, for which the names <i>Yoonia algicola</i> sp. nov. (G8-12<sup>T</sup>=KACC 22753<sup>T</sup>=JCM 35790<sup>T</sup>), <i>Yoonia rhodophyticola</i> sp. nov. (SS1-5<sup>T</sup>=KACC 22649<sup>T</sup>=JCM 35753<sup>T</sup>) and <i>Yoonia phaeophyticola</i> sp. nov. (BS5-3<sup>T</sup>=KACC 22648<sup>T</sup>=JCM 35751<sup>T</sup>) are proposed, respectively.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482539/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Yoonia algicola</i> sp. nov., <i>Yoonia rhodophyticola</i> sp. nov. and <i>Yoonia phaeophyticola</i> sp. nov., isolated from marine algae.\",\"authors\":\"Dong Min Han, Ji Hoon Jeon, Myeong Seo Jin, Dae Gyu Choi, Jeong Min Kim, Hülya Bayburt, Byeong Jun Choi, Che Ok Jeon\",\"doi\":\"10.1099/ijsem.0.006545\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Three Gram-stain-negative, strictly aerobic, non-motile, oxidase- and catalase-positive, short-rod-shaped bacteria, designated as strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup>, were isolated from marine algae in South Korea. Strain G8-12<sup>T</sup> exhibited optimal growth at 20-25 °C, pH 8.0 and 2.0-2.5% (w/v) NaCl, while strains SS1-5<sup>T</sup> and BS5-3<sup>T</sup> grew optimally at 25 °C, pH 7.0 and 1.5% NaCl. All strains contained ubiquinone-10 as the sole respiratory quinone, with phosphatidylglycerol and phosphatidylcholine as major polar lipids, and C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> and C<sub>16 : 0</sub> as major fatty acids (>5 %); C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> 11-methyl and C<sub>18 : 1</sub> 2-OH were additionally identified as major fatty acids in strain SS1-5<sup>T</sup>. The genomic DNA G+C contents were 57.0, 58.3 and 56.4% for strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup>, respectively. Strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup> exhibited less than 74.8% average nucleotide identity (ANI) and 19.7% digital DNA-DNA hybridization (dDDH) values with each other, indicating that they represent different species. Phylogenetic analyses based on both 16S rRNA gene and genome sequences revealed that strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup> form distinct phylogenetic lineages within the genus <i>Yoonia</i>. Relative to other closely related <i>Yoonia</i> species, these strains exhibited ANI and dDDH values below 83.5 and 26.9%, respectively, suggesting that they constitute novel species within the genus <i>Yoonia</i>. Based on their phenotypic, chemotaxonomic and phylogenetic characteristics, strains G8-12<sup>T</sup>, SS1-5<sup>T</sup> and BS5-3<sup>T</sup> represent three novel species of the genus <i>Yoonia</i>, for which the names <i>Yoonia algicola</i> sp. nov. (G8-12<sup>T</sup>=KACC 22753<sup>T</sup>=JCM 35790<sup>T</sup>), <i>Yoonia rhodophyticola</i> sp. nov. (SS1-5<sup>T</sup>=KACC 22649<sup>T</sup>=JCM 35753<sup>T</sup>) and <i>Yoonia phaeophyticola</i> sp. nov. (BS5-3<sup>T</sup>=KACC 22648<sup>T</sup>=JCM 35751<sup>T</sup>) are proposed, respectively.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482539/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006545\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006545","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Yoonia algicola sp. nov., Yoonia rhodophyticola sp. nov. and Yoonia phaeophyticola sp. nov., isolated from marine algae.
Three Gram-stain-negative, strictly aerobic, non-motile, oxidase- and catalase-positive, short-rod-shaped bacteria, designated as strains G8-12T, SS1-5T and BS5-3T, were isolated from marine algae in South Korea. Strain G8-12T exhibited optimal growth at 20-25 °C, pH 8.0 and 2.0-2.5% (w/v) NaCl, while strains SS1-5T and BS5-3T grew optimally at 25 °C, pH 7.0 and 1.5% NaCl. All strains contained ubiquinone-10 as the sole respiratory quinone, with phosphatidylglycerol and phosphatidylcholine as major polar lipids, and C18 : 1 ω7c and C16 : 0 as major fatty acids (>5 %); C18 : 1 ω7c 11-methyl and C18 : 1 2-OH were additionally identified as major fatty acids in strain SS1-5T. The genomic DNA G+C contents were 57.0, 58.3 and 56.4% for strains G8-12T, SS1-5T and BS5-3T, respectively. Strains G8-12T, SS1-5T and BS5-3T exhibited less than 74.8% average nucleotide identity (ANI) and 19.7% digital DNA-DNA hybridization (dDDH) values with each other, indicating that they represent different species. Phylogenetic analyses based on both 16S rRNA gene and genome sequences revealed that strains G8-12T, SS1-5T and BS5-3T form distinct phylogenetic lineages within the genus Yoonia. Relative to other closely related Yoonia species, these strains exhibited ANI and dDDH values below 83.5 and 26.9%, respectively, suggesting that they constitute novel species within the genus Yoonia. Based on their phenotypic, chemotaxonomic and phylogenetic characteristics, strains G8-12T, SS1-5T and BS5-3T represent three novel species of the genus Yoonia, for which the names Yoonia algicola sp. nov. (G8-12T=KACC 22753T=JCM 35790T), Yoonia rhodophyticola sp. nov. (SS1-5T=KACC 22649T=JCM 35753T) and Yoonia phaeophyticola sp. nov. (BS5-3T=KACC 22648T=JCM 35751T) are proposed, respectively.