Kaiqiang Yang, Tao Zhu, Caixia Sheng, Jia Zhu, Jing Xu, Guoxiang Fu
{"title":"VDAC3 在结直肠腺癌中的表达及其对预后的影响","authors":"Kaiqiang Yang, Tao Zhu, Caixia Sheng, Jia Zhu, Jing Xu, Guoxiang Fu","doi":"10.21037/tcr-24-402","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Colorectal adenocarcinoma (COAD) is a malignant tumor with high mortality and low 5-year survival rate. Voltage-dependent anion channel 3 (VDAC3) is the least understood isoform of voltage-dependent anion-selective channels in the mitochondrial outer membrane. In this thesis, we aimed to investigate the prognostic value of <i>VDAC3</i> and provide new insights into colon adenocarcinoma.</p><p><strong>Methods: </strong>We utilized The Cancer Genome Atlas (TCGA) database, Gene Expression Omnibus (GEO) database, Human Protein Atlas online database, and the University of ALabama at Birmingham CANcer data analysis Portal (UALCAN) database to analyze <i>VDAC3</i> expression in COAD and assess patient survival rates. Univariate and multivariate Cox regression analyses were employed to evaluate <i>VDAC3</i>'s prognostic significance for COAD. Gene set variation analysis (GSVA) was utilized to explore COAD-related signaling pathways associated with <i>VDAC3</i>. Additionally, we predicted the relationship between <i>VDAC3</i> expression and anticancer drug sensitivity using the CellMiner database.</p><p><strong>Results: </strong>In the TCGA database, <i>VDAC3</i> demonstrated elevated expression levels in COAD, which was further validated by findings from the GEO database. Survival analysis conducted using Kaplan-Meier (K-M) curves highlighted that the patients with decreased <i>VDAC3</i> expression exhibited significantly shorter overall survival durations. <i>VDAC3</i> expression demonstrated correlation with COAD pathological stage. <i>VDAC3</i> gene mutation was linked to COAD outcomes. Cox regression analysis showed that <i>VDAC3</i> was an independent predictor. In addition, GSVA analysis showed that <i>VDAC3</i> was closely related to mitochondria-related biological processes and involved in the occurrence and development of mitochondria-related diseases. Finally, analysis of the CellMiner database predicted that <i>VDAC3</i> expression was positively correlated with chelerythrine and cladribine, but negatively correlated with Ergenyl.</p><p><strong>Conclusions: </strong>Our study suggests that <i>VDAC3</i> may be a potential biomarker for early diagnosis, prognosis, and treatment of COAD.</p>","PeriodicalId":23216,"journal":{"name":"Translational cancer research","volume":"13 9","pages":"4736-4751"},"PeriodicalIF":1.5000,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11483328/pdf/","citationCount":"0","resultStr":"{\"title\":\"Expression and prognostic impact of <i>VDAC3</i> in colorectal adenocarcinoma.\",\"authors\":\"Kaiqiang Yang, Tao Zhu, Caixia Sheng, Jia Zhu, Jing Xu, Guoxiang Fu\",\"doi\":\"10.21037/tcr-24-402\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Colorectal adenocarcinoma (COAD) is a malignant tumor with high mortality and low 5-year survival rate. Voltage-dependent anion channel 3 (VDAC3) is the least understood isoform of voltage-dependent anion-selective channels in the mitochondrial outer membrane. In this thesis, we aimed to investigate the prognostic value of <i>VDAC3</i> and provide new insights into colon adenocarcinoma.</p><p><strong>Methods: </strong>We utilized The Cancer Genome Atlas (TCGA) database, Gene Expression Omnibus (GEO) database, Human Protein Atlas online database, and the University of ALabama at Birmingham CANcer data analysis Portal (UALCAN) database to analyze <i>VDAC3</i> expression in COAD and assess patient survival rates. Univariate and multivariate Cox regression analyses were employed to evaluate <i>VDAC3</i>'s prognostic significance for COAD. Gene set variation analysis (GSVA) was utilized to explore COAD-related signaling pathways associated with <i>VDAC3</i>. Additionally, we predicted the relationship between <i>VDAC3</i> expression and anticancer drug sensitivity using the CellMiner database.</p><p><strong>Results: </strong>In the TCGA database, <i>VDAC3</i> demonstrated elevated expression levels in COAD, which was further validated by findings from the GEO database. Survival analysis conducted using Kaplan-Meier (K-M) curves highlighted that the patients with decreased <i>VDAC3</i> expression exhibited significantly shorter overall survival durations. <i>VDAC3</i> expression demonstrated correlation with COAD pathological stage. <i>VDAC3</i> gene mutation was linked to COAD outcomes. Cox regression analysis showed that <i>VDAC3</i> was an independent predictor. In addition, GSVA analysis showed that <i>VDAC3</i> was closely related to mitochondria-related biological processes and involved in the occurrence and development of mitochondria-related diseases. Finally, analysis of the CellMiner database predicted that <i>VDAC3</i> expression was positively correlated with chelerythrine and cladribine, but negatively correlated with Ergenyl.</p><p><strong>Conclusions: </strong>Our study suggests that <i>VDAC3</i> may be a potential biomarker for early diagnosis, prognosis, and treatment of COAD.</p>\",\"PeriodicalId\":23216,\"journal\":{\"name\":\"Translational cancer research\",\"volume\":\"13 9\",\"pages\":\"4736-4751\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2024-09-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11483328/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Translational cancer research\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.21037/tcr-24-402\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/9/27 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q4\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Translational cancer research","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.21037/tcr-24-402","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/9/27 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"ONCOLOGY","Score":null,"Total":0}
Expression and prognostic impact of VDAC3 in colorectal adenocarcinoma.
Background: Colorectal adenocarcinoma (COAD) is a malignant tumor with high mortality and low 5-year survival rate. Voltage-dependent anion channel 3 (VDAC3) is the least understood isoform of voltage-dependent anion-selective channels in the mitochondrial outer membrane. In this thesis, we aimed to investigate the prognostic value of VDAC3 and provide new insights into colon adenocarcinoma.
Methods: We utilized The Cancer Genome Atlas (TCGA) database, Gene Expression Omnibus (GEO) database, Human Protein Atlas online database, and the University of ALabama at Birmingham CANcer data analysis Portal (UALCAN) database to analyze VDAC3 expression in COAD and assess patient survival rates. Univariate and multivariate Cox regression analyses were employed to evaluate VDAC3's prognostic significance for COAD. Gene set variation analysis (GSVA) was utilized to explore COAD-related signaling pathways associated with VDAC3. Additionally, we predicted the relationship between VDAC3 expression and anticancer drug sensitivity using the CellMiner database.
Results: In the TCGA database, VDAC3 demonstrated elevated expression levels in COAD, which was further validated by findings from the GEO database. Survival analysis conducted using Kaplan-Meier (K-M) curves highlighted that the patients with decreased VDAC3 expression exhibited significantly shorter overall survival durations. VDAC3 expression demonstrated correlation with COAD pathological stage. VDAC3 gene mutation was linked to COAD outcomes. Cox regression analysis showed that VDAC3 was an independent predictor. In addition, GSVA analysis showed that VDAC3 was closely related to mitochondria-related biological processes and involved in the occurrence and development of mitochondria-related diseases. Finally, analysis of the CellMiner database predicted that VDAC3 expression was positively correlated with chelerythrine and cladribine, but negatively correlated with Ergenyl.
Conclusions: Our study suggests that VDAC3 may be a potential biomarker for early diagnosis, prognosis, and treatment of COAD.
期刊介绍：
Translational Cancer Research (Transl Cancer Res TCR; Print ISSN: 2218-676X; Online ISSN 2219-6803; http://tcr.amegroups.com/) is an Open Access, peer-reviewed journal, indexed in Science Citation Index Expanded (SCIE). TCR publishes laboratory studies of novel therapeutic interventions as well as clinical trials which evaluate new treatment paradigms for cancer; results of novel research investigations which bridge the laboratory and clinical settings including risk assessment, cellular and molecular characterization, prevention, detection, diagnosis and treatment of human cancers with the overall goal of improving the clinical care of cancer patients. The focus of TCR is original, peer-reviewed, science-based research that successfully advances clinical medicine toward the goal of improving patients'' quality of life. The editors and an international advisory group of scientists and clinician-scientists as well as other experts will hold TCR articles to the high-quality standards. We accept Original Articles as well as Review Articles, Editorials and Brief Articles.
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