基于迁移学习的前列腺癌淋巴结转移分类框架

IF 3.9 3区 工程技术 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Biomedicines Pub Date : 2024-10-15 DOI:10.3390/biomedicines12102345
Suryadipto Sarkar, Teresa Wu, Matthew Harwood, Alvin C Silva
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引用次数: 0

摘要

背景:前列腺癌是美国第二大最常见的新诊断癌症。前列腺癌通常生长缓慢,如果癌细胞级别较低且局限于前列腺内,可以通过保守治疗(积极监测)或手术治疗。但是,如果癌症已经扩散到前列腺以外的部位,如淋巴结,则表明癌症更具侵袭性,手术治疗可能无法奏效。方法面临的挑战是,放射科医生在阅读前列腺特异性成像(如核磁共振成像)时,往往难以区分恶性淋巴结和非恶性淋巴结。一个新兴领域是为医学成像开发人工智能(AI)模型,包括机器学习和深度学习,以协助诊断任务。早期的研究侧重于实施纹理算法,以提取分类模型中使用的成像特征。最近,研究人员开始研究在独立特征提取和端到端分类任务中使用深度学习。为了应对小型数据集固有的挑战,本研究设计了一个可扩展的混合框架,利用预先训练好的深度学习模型 ResNet-18 提取特征,随后将这些特征输入机器学习分类器,以自动识别前列腺癌患者的恶性淋巴结。为了进行比较,还采用了两种纹理算法,即灰度级共现矩阵(GLCM)和 Gabor。结果利用机构前列腺淋巴结数据集(42 个阳性,84 个阴性),所提出的框架达到了 76.19% 的准确率、79.76% 的灵敏度和 69.05% 的特异性。使用 GLCM 特征,分类准确率达到 61.90%,灵敏度为 74.07%,特异性为 42.86%。使用 Gabor 特征的分类准确率为 65.08%,灵敏度为 73.47%,特异度为 52.50%。结论我们的研究结果表明,混合方法(即使用预先训练好的深度学习模型进行特征提取,然后使用机器学习分类器)是一种可行的解决方案。这种混合方法尤其适用于数据集较小的基于医学影像的应用。
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A Transfer Learning-Based Framework for Classifying Lymph Node Metastasis in Prostate Cancer Patients.

Background: Prostate cancer is the second most common new cancer diagnosis in the United States. It is usually slow-growing, and when it is low-grade and confined to the prostate gland, it can be treated either conservatively (through active surveillance) or with surgery. However, if the cancer has spread beyond the prostate, such as to the lymph nodes, then that indicates a more aggressive cancer, and surgery may not be adequate. Methods: The challenge is that it is often difficult for radiologists reading prostate-specific imaging such as magnetic resonance images (MRIs) to differentiate malignant lymph nodes from non-malignant ones. An emerging field is the development of artificial intelligence (AI) models, including machine learning and deep learning, for medical imaging to assist in diagnostic tasks. Earlier research focused on implementing texture algorithms to extract imaging features used in classification models. More recently, researchers began studying the use of deep learning for both stand-alone feature extraction and end-to-end classification tasks. In order to tackle the challenges inherent in small datasets, this study was designed as a scalable hybrid framework utilizing pre-trained ResNet-18, a deep learning model, to extract features that were subsequently fed into a machine learning classifier to automatically identify malignant lymph nodes in patients with prostate cancer. For comparison, two texture algorithms were implemented, namely the gray-level co-occurrence matrix (GLCM) and Gabor. Results: Using an institutional prostate lymph node dataset (42 positives, 84 negatives), the proposed framework achieved an accuracy of 76.19%, a sensitivity of 79.76%, and a specificity of 69.05%. Using GLCM features, the classification achieved an accuracy of 61.90%, a sensitivity of 74.07%, and a specificity of 42.86%. Using Gabor features, the classification achieved an accuracy of 65.08%, a sensitivity of 73.47%, and a specificity of 52.50%. Conclusions: Our results demonstrate that a hybrid approach, i.e., using a pre-trainined deep learning model for feature extraction, followed by a machine learning classifier, is a viable solution. This hybrid approach is especially useful in medical-imaging-based applications with small datasets.

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来源期刊
Biomedicines
Biomedicines Biochemistry, Genetics and Molecular Biology-General Biochemistry,Genetics and Molecular Biology
CiteScore
5.20
自引率
8.50%
发文量
2823
审稿时长
8 weeks
期刊介绍: Biomedicines (ISSN 2227-9059; CODEN: BIOMID) is an international, scientific, open access journal on biomedicines published quarterly online by MDPI.
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