ContraSurv:通过数据高效的弱监督对比学习增强医学影像的预后评估。

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS IEEE Journal of Biomedical and Health Informatics Pub Date : 2024-10-22 DOI:10.1109/JBHI.2024.3484991
Hailin Li, Di Dong, Mengjie Fang, Bingxi He, Shengyuan Liu, Chaoen Hu, Zaiyi Liu, Hexiang Wang, Linglong Tang, Jie Tian
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引用次数: 0

摘要

预后评估仍然是医学研究中的一项重要挑战,但往往受限于缺乏标记良好的数据。在这项工作中,我们介绍了 ContraSurv,这是一种基于对比学习的弱监督学习框架,旨在增强三维医学图像中的预后预测。ContraSurv 既利用了无标记数据中固有的自监督信息,也利用了删减数据中存在的弱监督线索,从而提高了提取预后表征的能力。为此,我们建立了针对医学图像数据集进行优化的视觉转换器架构,并引入了用于预后评估的自监督和监督对比学习的新方法。此外,我们还提出了一种专门的监督对比损失函数,并引入了用于生存分析的新型数据增强技术 SurvMix。我们在三个真实世界数据集上对三种癌症类型和两种成像模式进行了评估。结果证实,ContraSurv 的性能优于其他同类方法,尤其是在高删减率的数据中。
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ContraSurv: Enhancing Prognostic Assessment of Medical Images via Data-Efficient Weakly Supervised Contrastive Learning.

Prognostic assessment remains a critical challenge in medical research, often limited by the lack of well-labeled data. In this work, we introduce ContraSurv, a weakly-supervised learning framework based on contrastive learning, designed to enhance prognostic predictions in 3D medical images. ContraSurv utilizes both the self-supervised information inherent in unlabeled data and the weakly-supervised cues present in censored data, refining its capacity to extract prognostic representations. For this purpose, we establish a Vision Transformer architecture optimized for our medical image datasets and introduce novel methodologies for both self-supervised and supervised contrastive learning for prognostic assessment. Additionally, we propose a specialized supervised contrastive loss function and introduce SurvMix, a novel data augmentation technique for survival analysis. Evaluations were conducted across three cancer types and two imaging modalities on three real-world datasets. The results confirmed the enhanced performance of ContraSurv over competing methods, particularly in data with a high censoring rate.

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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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