利用生长弹性中的新型能量优化方法模拟肠道截面的不规则对称破缺

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-10-22 DOI:10.1016/j.jtbi.2024.111971
Min Wu
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引用次数: 0

摘要

生长弹性(又称形态弹性)是理解软生物组织复杂形状发展的一个强大模型框架。在每一瞬间,通过映射连续体构件的几何生长方式以及它们如何对其相邻构件的推拉作出弹性响应,生长结构的形状就能从机械平衡状态中确定下来。随着系统在生长过程中不断增加机械负荷,组织表面会从相对扁平的几何形状形成许多有趣的形状,如光滑的波浪形皱纹、尖锐的折痕和深深的褶皱。以前的生长弹性数值模拟再现了许多有趣的形状,与现实中观察到的形状相似,例如哺乳动物大脑和内脏上的褶皱。就哺乳动物的内脏而言,研究表明,即使在器官内层各向同性均匀生长的简单假设下,也能模拟出器官内表面的波浪形皱纹、深褶皱和尖锐折痕。有趣的是,模拟出的图案沿管子的圆周都是规则的,要么都是光滑的,要么都是尖锐的压痕,而现实中的一些起伏图案则表现为不规则的图案,并且沿圆周混合了尖锐的折痕和光滑的压痕。我们能否模拟不规则的压痕模式,而不使生长模式进一步复杂化呢?在本文中,我们通过开发 Rayleigh-Ritz 有限元方法(FEM),发现了大量具有不规则压痕模式的形状解决方案。与以往求解机械平衡方程弱表述的 Galerkin 有限元法相比,新方法为离散化能量函数提出了一个优化问题,其临界点等同于求解机械平衡方程得到的解。这种新方法比以前的方法更稳健。具体来说,它不要求初始猜测必须接近解才能实现收敛,而且可以控制整个能量景观的数值迭代方向。这种方法可以捕捉到更多以前的方法难以捕捉到的解。除了之前发现的规则光滑和非光滑配置外,我们还发现了一种新的过渡性不规则光滑形状、光滑和非光滑表面压痕混合的新形状,以及具有不同折痕数量的各种不规则图案。我们的数值结果表明,生长-弹性建模能够与现实中观察到的更多形状模式相匹配。
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Simulating irregular symmetry breaking in gut cross sections using a novel energy-optimization approach in growth-elasticity
Growth-elasticity (also known as morphoelasticity) is a powerful model framework for understanding complex shape development in soft biological tissues. At each instant, by mapping how continuum building blocks have grown geometrically and how they respond elastically to the push-and-pull from their neighbors, the shape of the growing structure is determined from a state of mechanical equilibrium. As mechanical loads continue to be added to the system through growth, many interesting shapes, such as smooth wavy wrinkles, sharp creases, and deep folds, can form on the tissue surface from a relatively flatter geometry.
Previous numerical simulations of growth-elasticity have reproduced many interesting shapes resembling those observed in reality, such as the foldings on mammalian brains and guts. In the case of mammalian guts, it has been shown that wavy wrinkles, deep folds, and sharp creases on the interior organ surface can be simulated even under a simple assumption of isotropic uniform growth in the interior layer of the organ. Interestingly, the simulated patterns are all regular along the tube’s circumference, with either all smooth or all sharp indentations, whereas some undulation patterns in reality exhibit irregular patterns and a mixture of sharp creases and smooth indentations along the circumference. Can we simulate irregular indentation patterns without further complicating the growth patterning?
In this paper, we have discovered abundant shape solutions with irregular indentation patterns by developing a Rayleigh–Ritz finite-element method (FEM). In contrast to previous Galerkin FEMs, which solve the weak formulation of the mechanical-equilibrium equations, the new method formulates an optimization problem for the discretized energy functional, whose critical points are equivalent to solutions obtained by solving the mechanical-equilibrium equations. This new method is more robust than previous methods. Specifically, it does not require the initial guess to be near a solution to achieve convergence, and it allows control over the direction of numerical iterates across the energy landscape. This approach enables the capture of more solutions that cannot be easily reached by previous methods. In addition to the previously found regular smooth and non-smooth configurations, we have identified a new transitional irregular smooth shape, new shapes with a mixture of smooth and non-smooth surface indentations, and a variety of irregular patterns with different numbers of creases. Our numerical results demonstrate that growth-elasticity modeling can match more shape patterns observed in reality than previously thought.
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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