利用光学光热红外(O-PTIR)光谱成像和机器学习评估塑料包埋样本中的亚微米骨组织成分

IF 3.5 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Structural Biology: X Pub Date : 2024-10-09 DOI:10.1016/j.yjsbx.2024.100111
Isha Dev , Sofia Mehmood , Nancy Pleshko , Iyad Obeid , William Querido
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引用次数: 0

摘要

了解亚微米级的骨组织成分对于阐明导致骨病和骨脆性的因素至关重要。在这里,我们介绍了一种利用光学光热红外(O-PTIR)光谱和成像并结合机器学习分析的新方法,以 500 纳米的空间分辨率评估骨组织成分。这种方法可用于评估嵌入典型聚甲基丙烯酸甲酯(PMMA)块中的厚骨样本,从而省去了繁琐的薄切片检查。我们展示了 O-PTIR 成像在评估骨组织矿物质和蛋白质分布方面的实用性,以及在传统红外成像模式无法达到的空间分辨率下探索围绕微孔的结构-组成关系。利用野生型(WT)小鼠和成骨不全症(OIM)小鼠模型的骨样本,我们进一步展示了如何应用 O-PTIR 光谱量化整个皮质骨空间定义区域的矿物质含量、结晶度和碳酸盐含量。值得注意的是,我们展示了使用支持向量机(SVM)进行的机器学习分析能够根据输入的光谱数据成功识别骨表型(WT 中典型,OIM 中脆弱),在使用胶原蛋白光谱范围时,超过 86% 的样本被正确识别。我们的研究结果凸显了 O-PTIR 光谱和成像作为探索骨亚微米组成的宝贵工具的潜力。
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Assessment of submicron bone tissue composition in plastic-embedded samples using optical photothermal infrared (O-PTIR) spectral imaging and machine learning
Understanding the composition of bone tissue at the submicron level is crucial to elucidate factors contributing to bone disease and fragility. Here, we introduce a novel approach utilizing optical photothermal infrared (O-PTIR) spectroscopy and imaging coupled with machine learning analysis to assess bone tissue composition at 500 nm spatial resolution. This approach was used to evaluate thick bone samples embedded in typical poly(methyl methacrylate) (PMMA) blocks, eliminating the need for cumbersome thin sectioning. We demonstrate the utility of O-PTIR imaging to assess the distribution of bone tissue mineral and protein, as well as to explore the structure-composition relationship surrounding microporosity at a spatial resolution unattainable by conventional infrared imaging modalities. Using bone samples from wildtype (WT) mice and from a mouse model of osteogenesis imperfecta (OIM), we further showcase the application of O-PTIR spectroscopy to quantify mineral content, crystallinity, and carbonate content in spatially defined regions across the cortical bone. Notably, we show that machine learning analysis using support vector machine (SVM) was successful in identifying bone phenotypes (typical in WT, fragile in OIM) based on input of spectral data, with over 86 % of samples correctly identified when using the collagen spectral range. Our findings highlight the potential of O-PTIR spectroscopy and imaging as valuable tools for exploring bone submicron composition.
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来源期刊
Journal of Structural Biology: X
Journal of Structural Biology: X Biochemistry, Genetics and Molecular Biology-Structural Biology
CiteScore
6.50
自引率
0.00%
发文量
20
审稿时长
62 days
期刊最新文献
Corrigendum to “Minimizing ice contamination during specimen preparation for cryo-soft X-ray tomography and cryo-electron tomography” [J. Struct. Biol.: X 10(2024) 100113] Editorial by Natalie Reznikov [for Buss et al., “Hierarchical organization of bone in three dimensions: A twist of twists” (2022)] Structural analysis of the stable form of fibroblast growth factor 2 – FGF2-STAB Localization of albumin with correlative super resolution light- and electron microscopy in the kidney Minimizing ice contamination during specimen preparation for cryo-soft X-ray tomography and cryo-electron tomography
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