{"title":"霍乱弧菌的一种染料脱色过氧化物酶可以脱金属血红素。","authors":"Takeshi Uchida , Sayaka Umetsu , Miho Sasaki , Haruka Yoshimura , Issei Omura , Koichiro Ishimori","doi":"10.1016/j.jinorgbio.2024.112764","DOIUrl":null,"url":null,"abstract":"<div><div>Iron is an essential element for bacterial survival. Bacterial pathogens have therefore developed methods to obtain iron. <em>Vibrio cholerae</em>, the intestinal pathogen that causes cholera, utilizes heme as an iron source. DyP from <em>V. cholerae</em> (<em>Vc</em>DyP) is a dye-decolorizing peroxidase. When <em>Vc</em>DyP was expressed in <em>Escherichia coli</em> and purified, it was found to contain protoporphyrin IX (PPIX) but not heme, indicating that the protein possesses deferrochelatase activity. Here, we examined the demetallation reaction of <em>Vc</em>DyP using fluorescence spectroscopy. Treatment of heme-reconstituted <em>Vc</em>DyP with sodium dithionite under anaerobic conditions led to an increase in the fluorescence intensity at 624 nm, suggesting the formation of PPIX. Although the same reaction was conducted using myoglobin, horseradish peroxidase and hemin, no increase in the fluorescence was observed. Therefore, demetallation of heme is specific to <em>Vc</em>DyP. This reaction was faster at lower pH, but the amplitudes of the fluorescence increase were larger at pH 6.5–7.5, in clear contrast to the dye-decolorizing activity with the optimal pH of 4.5. In contrast to HutZ from <em>V. cholerae</em>, which is a heme-degrading enzyme that cleaves the heme macrocycle to release iron, <em>Vc</em>DyP can remove iron from heme without degradation. To our knowledge, <em>Vc</em>DyP is the first enzyme whose demetallation activity has been confirmed at neutral pH. Our results show that <em>Vc</em>DyP is a bifunctional protein that degrades anthraquinone dyes and demetallates heme.</div></div>","PeriodicalId":364,"journal":{"name":"Journal of Inorganic Biochemistry","volume":null,"pages":null},"PeriodicalIF":3.8000,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A dye-decolorizing peroxidase from Vibrio cholerae can demetallate heme\",\"authors\":\"Takeshi Uchida , Sayaka Umetsu , Miho Sasaki , Haruka Yoshimura , Issei Omura , Koichiro Ishimori\",\"doi\":\"10.1016/j.jinorgbio.2024.112764\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Iron is an essential element for bacterial survival. Bacterial pathogens have therefore developed methods to obtain iron. <em>Vibrio cholerae</em>, the intestinal pathogen that causes cholera, utilizes heme as an iron source. DyP from <em>V. cholerae</em> (<em>Vc</em>DyP) is a dye-decolorizing peroxidase. When <em>Vc</em>DyP was expressed in <em>Escherichia coli</em> and purified, it was found to contain protoporphyrin IX (PPIX) but not heme, indicating that the protein possesses deferrochelatase activity. Here, we examined the demetallation reaction of <em>Vc</em>DyP using fluorescence spectroscopy. Treatment of heme-reconstituted <em>Vc</em>DyP with sodium dithionite under anaerobic conditions led to an increase in the fluorescence intensity at 624 nm, suggesting the formation of PPIX. Although the same reaction was conducted using myoglobin, horseradish peroxidase and hemin, no increase in the fluorescence was observed. Therefore, demetallation of heme is specific to <em>Vc</em>DyP. This reaction was faster at lower pH, but the amplitudes of the fluorescence increase were larger at pH 6.5–7.5, in clear contrast to the dye-decolorizing activity with the optimal pH of 4.5. In contrast to HutZ from <em>V. cholerae</em>, which is a heme-degrading enzyme that cleaves the heme macrocycle to release iron, <em>Vc</em>DyP can remove iron from heme without degradation. To our knowledge, <em>Vc</em>DyP is the first enzyme whose demetallation activity has been confirmed at neutral pH. Our results show that <em>Vc</em>DyP is a bifunctional protein that degrades anthraquinone dyes and demetallates heme.</div></div>\",\"PeriodicalId\":364,\"journal\":{\"name\":\"Journal of Inorganic Biochemistry\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.8000,\"publicationDate\":\"2024-10-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Inorganic Biochemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0162013424002897\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Inorganic Biochemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0162013424002897","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
A dye-decolorizing peroxidase from Vibrio cholerae can demetallate heme
Iron is an essential element for bacterial survival. Bacterial pathogens have therefore developed methods to obtain iron. Vibrio cholerae, the intestinal pathogen that causes cholera, utilizes heme as an iron source. DyP from V. cholerae (VcDyP) is a dye-decolorizing peroxidase. When VcDyP was expressed in Escherichia coli and purified, it was found to contain protoporphyrin IX (PPIX) but not heme, indicating that the protein possesses deferrochelatase activity. Here, we examined the demetallation reaction of VcDyP using fluorescence spectroscopy. Treatment of heme-reconstituted VcDyP with sodium dithionite under anaerobic conditions led to an increase in the fluorescence intensity at 624 nm, suggesting the formation of PPIX. Although the same reaction was conducted using myoglobin, horseradish peroxidase and hemin, no increase in the fluorescence was observed. Therefore, demetallation of heme is specific to VcDyP. This reaction was faster at lower pH, but the amplitudes of the fluorescence increase were larger at pH 6.5–7.5, in clear contrast to the dye-decolorizing activity with the optimal pH of 4.5. In contrast to HutZ from V. cholerae, which is a heme-degrading enzyme that cleaves the heme macrocycle to release iron, VcDyP can remove iron from heme without degradation. To our knowledge, VcDyP is the first enzyme whose demetallation activity has been confirmed at neutral pH. Our results show that VcDyP is a bifunctional protein that degrades anthraquinone dyes and demetallates heme.
期刊介绍:
The Journal of Inorganic Biochemistry is an established international forum for research in all aspects of Biological Inorganic Chemistry. Original papers of a high scientific level are published in the form of Articles (full length papers), Short Communications, Focused Reviews and Bioinorganic Methods. Topics include: the chemistry, structure and function of metalloenzymes; the interaction of inorganic ions and molecules with proteins and nucleic acids; the synthesis and properties of coordination complexes of biological interest including both structural and functional model systems; the function of metal- containing systems in the regulation of gene expression; the role of metals in medicine; the application of spectroscopic methods to determine the structure of metallobiomolecules; the preparation and characterization of metal-based biomaterials; and related systems. The emphasis of the Journal is on the structure and mechanism of action of metallobiomolecules.