Aayush Verma, Simone Tzaridis, Marian Blazes, Martin Friedlander, Aaron Y Lee, Yue Wu
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We compared our model against popular supervised and semisupervised models, as well as conducted ablation studies on the model itself.</p><p><strong>Results: </strong>Our model significantly outperformed all other models in terms of intersection over union on the 10 retinal layers and two retinal features in the test dataset. For the remaining two features, the pre-retinal space above the internal limiting membrane and the background below the retinal pigment epithelium, all of the models performed similarly. Furthermore, we showed that using more unlabeled images improved the performance of our semisupervised model.</p><p><strong>Conclusions: </strong>Our model improves segmentation performance over supervised models by leveraging unlabeled data. This approach has the potential to improve segmentation performance for other diseases, where labeled data is limited but unlabeled data abundant.</p><p><strong>Translational relevance: </strong>Improving automated segmentation of MacTel pathology on OCT imaging by leveraging unlabeled data may enable more accurate assessment of disease progression, and this approach may be useful for improving feature identification and location on OCT in other rare diseases as well.</p>","PeriodicalId":23322,"journal":{"name":"Translational Vision Science & Technology","volume":"13 11","pages":"2"},"PeriodicalIF":2.6000,"publicationDate":"2024-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542501/pdf/","citationCount":"0","resultStr":"{\"title\":\"Developing a 10-Layer Retinal Segmentation for MacTel Using Semi-Supervised Learning.\",\"authors\":\"Aayush Verma, Simone Tzaridis, Marian Blazes, Martin Friedlander, Aaron Y Lee, Yue Wu\",\"doi\":\"10.1167/tvst.13.11.2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Purpose: </strong>Automated segmentation software in optical coherence tomography (OCT) devices is usually developed for and primarily tested on common diseases. 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引用次数: 0
摘要
目的:光学相干断层扫描(OCT)设备中的自动分割软件通常是针对常见疾病开发的,并主要针对常见疾病进行测试。因此,对于患有罕见病症的眼睛,自动软件的分割准确性可能会受到限制:我们试图开发一种半监督深度学习分割模型,通过利用未标记的图像,使用一个小型标记数据集对黄斑部远端血管扩张症 II 型(MacTel)患者的 10 个视网膜层和 4 个视网膜特征进行分割。我们将我们的模型与流行的监督和半监督模型进行了比较,并对模型本身进行了消融研究:在测试数据集中的 10 个视网膜层和两个视网膜特征方面,我们的模型在交集和联合方面明显优于所有其他模型。对于其余两个特征,即内缘膜上方的视网膜前空间和视网膜色素上皮下方的背景,所有模型的表现都差不多。此外,我们还发现,使用更多的未标记图像可以提高半监督模型的性能:我们的模型通过利用未标记数据,提高了监督模型的分割性能。这种方法有可能提高其他疾病的分割性能,因为这些疾病的标注数据有限,而未标注数据却很丰富:通过利用非标记数据改进OCT成像上MacTel病理的自动分割,可以更准确地评估疾病的进展情况,这种方法也可用于改进其他罕见疾病的OCT特征识别和定位。
Developing a 10-Layer Retinal Segmentation for MacTel Using Semi-Supervised Learning.
Purpose: Automated segmentation software in optical coherence tomography (OCT) devices is usually developed for and primarily tested on common diseases. Therefore segmentation accuracy of automated software can be limited in eyes with rare pathologies.
Methods: We sought to develop a semisupervised deep learning segmentation model that segments 10 retinal layers and four retinal features in eyes with Macular Telangiectasia Type II (MacTel) using a small labeled dataset by leveraging unlabeled images. We compared our model against popular supervised and semisupervised models, as well as conducted ablation studies on the model itself.
Results: Our model significantly outperformed all other models in terms of intersection over union on the 10 retinal layers and two retinal features in the test dataset. For the remaining two features, the pre-retinal space above the internal limiting membrane and the background below the retinal pigment epithelium, all of the models performed similarly. Furthermore, we showed that using more unlabeled images improved the performance of our semisupervised model.
Conclusions: Our model improves segmentation performance over supervised models by leveraging unlabeled data. This approach has the potential to improve segmentation performance for other diseases, where labeled data is limited but unlabeled data abundant.
Translational relevance: Improving automated segmentation of MacTel pathology on OCT imaging by leveraging unlabeled data may enable more accurate assessment of disease progression, and this approach may be useful for improving feature identification and location on OCT in other rare diseases as well.
期刊介绍:
Translational Vision Science & Technology (TVST), an official journal of the Association for Research in Vision and Ophthalmology (ARVO), an international organization whose purpose is to advance research worldwide into understanding the visual system and preventing, treating and curing its disorders, is an online, open access, peer-reviewed journal emphasizing multidisciplinary research that bridges the gap between basic research and clinical care. A highly qualified and diverse group of Associate Editors and Editorial Board Members is led by Editor-in-Chief Marco Zarbin, MD, PhD, FARVO.
The journal covers a broad spectrum of work, including but not limited to:
Applications of stem cell technology for regenerative medicine,
Development of new animal models of human diseases,
Tissue bioengineering,
Chemical engineering to improve virus-based gene delivery,
Nanotechnology for drug delivery,
Design and synthesis of artificial extracellular matrices,
Development of a true microsurgical operating environment,
Refining data analysis algorithms to improve in vivo imaging technology,
Results of Phase 1 clinical trials,
Reverse translational ("bedside to bench") research.
TVST seeks manuscripts from scientists and clinicians with diverse backgrounds ranging from basic chemistry to ophthalmic surgery that will advance or change the way we understand and/or treat vision-threatening diseases. TVST encourages the use of color, multimedia, hyperlinks, program code and other digital enhancements.